Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACEZDF_RS02790 Genome accession   NZ_CP169539
Coordinates   575707..576225 (+) Length   172 a.a.
NCBI ID   WP_047102662.1    Uniprot ID   A0A0H0YB43
Organism   Vibrio alginolyticus strain BR53     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 570707..581225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEZDF_RS02780 (ACEZDF_02780) gshA 573425..574993 (+) 1569 WP_005385430.1 glutamate--cysteine ligase -
  ACEZDF_RS02785 (ACEZDF_02785) - 575017..575622 (+) 606 WP_005379943.1 hypothetical protein -
  ACEZDF_RS02790 (ACEZDF_02790) luxS 575707..576225 (+) 519 WP_047102662.1 S-ribosylhomocysteine lyase Regulator
  ACEZDF_RS02795 (ACEZDF_02795) - 576293..577573 (-) 1281 WP_005379948.1 HlyC/CorC family transporter -
  ACEZDF_RS02800 (ACEZDF_02800) - 577698..578492 (-) 795 WP_005379950.1 inner membrane protein YpjD -
  ACEZDF_RS02805 (ACEZDF_02805) ffh 578717..580099 (+) 1383 WP_005385423.1 signal recognition particle protein -
  ACEZDF_RS02810 (ACEZDF_02810) rpsP 580309..580557 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  ACEZDF_RS02815 (ACEZDF_02815) rimM 580587..581135 (+) 549 WP_005379964.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19102.84 Da        Isoelectric Point: 4.8443

>NTDB_id=1051932 ACEZDF_RS02790 WP_047102662.1 575707..576225(+) (luxS) [Vibrio alginolyticus strain BR53]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNRIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1051932 ACEZDF_RS02790 WP_047102662.1 575707..576225(+) (luxS) [Vibrio alginolyticus strain BR53]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCGGCAGTGCGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGGTGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGATGTGCTGAAGGTAGAAAGTCAGAATAGGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H0YB43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment