Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8610_RS03290 Genome accession   NZ_AP028384
Coordinates   638834..639271 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain BCH-11253     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 633834..644271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8610_RS03270 (B11253_06380) kdpD 634325..636253 (+) 1929 WP_002921945.1 sensor histidine kinase -
  R8610_RS03275 (B11253_06390) uvrB 636248..638221 (-) 1974 WP_002921946.1 excinuclease ABC subunit UvrB -
  R8610_RS03280 (B11253_06400) - 638375..638605 (+) 231 WP_002852327.1 hypothetical protein -
  R8610_RS03285 (B11253_06410) - 638595..638837 (+) 243 WP_002854947.1 hypothetical protein -
  R8610_RS03290 (B11253_06420) Cj0683 638834..639271 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R8610_RS03295 (B11253_06430) priA 639253..641106 (+) 1854 WP_002921948.1 primosomal protein N' -
  R8610_RS03300 cipA 641116..642509 (-) 1394 Protein_638 DUF2972 domain-containing protein -
  R8610_RS03305 (B11253_06460) ispG 642655..643728 (+) 1074 WP_002921950.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=105193 R8610_RS03290 WP_002852324.1 638834..639271(+) (Cj0683) [Campylobacter jejuni strain BCH-11253]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=105193 R8610_RS03290 WP_002852324.1 638834..639271(+) (Cj0683) [Campylobacter jejuni strain BCH-11253]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment