Detailed information NTG1051929

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACEZDF_RS02660
• Genome accession: NZ_CP169539
• Coordinates: 553070..554056 (+)
• Length: 328 a.a.
• NCBI ID: WP_005393877.1
• Uniprot ID: A0AAE4M7L2
• Organism: Vibrio alginolyticus strain BR53
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 548070..559056

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEZDF_RS02625 (ACEZDF_02625)	ftsB	548079..548360 (+)	282	WP_005380907.1	cell division protein FtsB	-
ACEZDF_RS02630 (ACEZDF_02630)	ispD	548362..549066 (+)	705	WP_256935759.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACEZDF_RS02635 (ACEZDF_02635)	ispF	549084..549560 (+)	477	WP_012841409.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACEZDF_RS02640 (ACEZDF_02640)	truD	549607..550650 (+)	1044	WP_258685436.1	tRNA pseudouridine(13) synthase TruD	-
ACEZDF_RS02645 (ACEZDF_02645)	surE	550650..551426 (+)	777	WP_005393882.1	5'/3'-nucleotidase SurE	-
ACEZDF_RS02650 (ACEZDF_02650)	-	551426..552052 (+)	627	WP_046875091.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACEZDF_RS02655 (ACEZDF_02655)	-	552066..552989 (+)	924	WP_006743295.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACEZDF_RS02660 (ACEZDF_02660)	rpoS	553070..554056 (+)	987	WP_005393877.1	RNA polymerase sigma factor RpoS	Regulator
ACEZDF_RS02665 (ACEZDF_02665)	mutS	554139..556700 (-)	2562	WP_006743294.1	DNA mismatch repair protein MutS	-
ACEZDF_RS02670 (ACEZDF_02670)	pncC	556785..557267 (+)	483	WP_368849068.1	nicotinamide-nucleotide amidase	-
ACEZDF_RS02675 (ACEZDF_02675)	recA	557468..558511 (+)	1044	WP_005393872.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37384.30 Da
• Isoelectric Point: 4.7299

>NTDB_id=1051929 ACEZDF_RS02660 WP_005393877.1 553070..554056(+) (rpoS) [Vibrio alginolyticus strain BR53]
MSISNTVTKVEEFAFDNASVKTIDNELEKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=1051929 ACEZDF_RS02660 WP_005393877.1 553070..554056(+) (rpoS) [Vibrio alginolyticus strain BR53]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAAATCATCATCCACAGAAAGCAAAACGGCTGCGCGTGAAGAGTTTGACGCGAGCAGTAAAAGCTTAGACGCAACTC
AGTTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCCGAAGAAGAAGTGCTTTATGCTCGACGAGCTCTGCGT
GGCGACGAAGCGGCACGTAAACGTATGATCGAAAGTAACCTACGTTTGGTGGTCAAGATCTCTCGTCGATATAGTAATCG
CGGCCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTTGGTTTGATCCGTGCGGTCGAGAAGTTCGATCCAGAGCGTG
GTTTCCGCTTCTCTACTTATGCGACCTGGTGGATCCGACAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACGATC
CGTCTACCTATTCATGTCGTGAAAGAGCTAAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCACGA
ACCTACCGCAGAAGAAATTGCTGCTCAGTTAGATATTCCAGTCGAAGATGTAAGCAAAATGCTACGTCTCAATGAGCGTA
TCAGTTCTGTCGACACGCCAATCGGTGGTGACGGTGAAAAAGCGCTGTTGGATATTATTCCCGACGCAAACAACTCCGAT
CCAGAAGTCTCGACTCAAGATGACGATATCAAATCATCGCTGATTCATTGGTTAGAAGAGTTGAATCCAAAACAAAAAGA
AGTACTTGCACGACGTTTTGGTCTTCTAGGCTATGAGCCTTCGACGCTTGAAGAAGTTGGTCGAGAGATTGGTTTGACAC
GTGAGCGTGTACGTCAAATCCAAGTAGAAGGTTTACGTCGTCTTCGTGAGGTTTTAATCAAGCAAGGTTTGAACATGGAA
AACTTATTTAACGTCGAAGATGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.851