Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACE1EH_RS12800 Genome accession   NZ_CP169535
Coordinates   2641404..2642156 (-) Length   250 a.a.
NCBI ID   WP_105937480.1    Uniprot ID   -
Organism   Bacillus velezensis strain HJ-16     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2636404..2647156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE1EH_RS12775 (ACE1EH_12775) mreC 2636840..2637703 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  ACE1EH_RS12780 (ACE1EH_12780) mreB 2637734..2638747 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ACE1EH_RS12785 (ACE1EH_12785) radC 2638839..2639534 (-) 696 WP_007408165.1 DNA repair protein RadC -
  ACE1EH_RS12790 (ACE1EH_12790) - 2639566..2640135 (-) 570 WP_032873810.1 nucleoside triphosphate pyrophosphatase -
  ACE1EH_RS12795 (ACE1EH_12795) - 2640276..2641277 (-) 1002 WP_375004306.1 SPOR domain-containing protein -
  ACE1EH_RS12800 (ACE1EH_12800) comC 2641404..2642156 (-) 753 WP_105937480.1 A24 family peptidase Machinery gene
  ACE1EH_RS12805 (ACE1EH_12805) - 2642296..2643588 (-) 1293 WP_375004307.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACE1EH_RS12810 (ACE1EH_12810) - 2643647..2646289 (-) 2643 WP_044801613.1 valine--tRNA ligase -
  ACE1EH_RS12815 (ACE1EH_12815) - 2646742..2646933 (+) 192 WP_007612879.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27205.91 Da        Isoelectric Point: 9.4293

>NTDB_id=1051885 ACE1EH_RS12800 WP_105937480.1 2641404..2642156(-) (comC) [Bacillus velezensis strain HJ-16]
MLLILFFLGLIFGSFFYTAACRIPLRISVVSPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1051885 ACE1EH_RS12800 WP_105937480.1 2641404..2642156(-) (comC) [Bacillus velezensis strain HJ-16]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTGTTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCTT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGCATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGCATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment