Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACE1EH_RS11900 Genome accession   NZ_CP169535
Coordinates   2482170..2482937 (-) Length   255 a.a.
NCBI ID   WP_012118014.1    Uniprot ID   A7Z6U2
Organism   Bacillus velezensis strain HJ-16     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2477170..2487937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE1EH_RS11880 (ACE1EH_11880) - 2477372..2478184 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  ACE1EH_RS11885 (ACE1EH_11885) ccpN 2478210..2478848 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  ACE1EH_RS11890 (ACE1EH_11890) glyS 2478949..2480988 (-) 2040 WP_375004252.1 glycine--tRNA ligase subunit beta -
  ACE1EH_RS11895 (ACE1EH_11895) glyQ 2480981..2481868 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  ACE1EH_RS11900 (ACE1EH_11900) recO 2482170..2482937 (-) 768 WP_012118014.1 DNA repair protein RecO Machinery gene
  ACE1EH_RS11905 (ACE1EH_11905) - 2482974..2483117 (-) 144 WP_007408286.1 YqzL family protein -
  ACE1EH_RS11910 (ACE1EH_11910) era 2483273..2484178 (-) 906 WP_007408285.1 GTPase Era -
  ACE1EH_RS11915 (ACE1EH_11915) - 2484159..2484569 (-) 411 WP_003152976.1 cytidine deaminase -
  ACE1EH_RS11920 (ACE1EH_11920) - 2484693..2485067 (-) 375 WP_224182218.1 diacylglycerol kinase family protein -
  ACE1EH_RS11925 (ACE1EH_11925) ybeY 2485048..2485521 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  ACE1EH_RS11930 (ACE1EH_11930) - 2485522..2487654 (-) 2133 WP_375004253.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29310.95 Da        Isoelectric Point: 8.5625

>NTDB_id=1051878 ACE1EH_RS11900 WP_012118014.1 2482170..2482937(-) (recO) [Bacillus velezensis strain HJ-16]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1051878 ACE1EH_RS11900 WP_012118014.1 2482170..2482937(-) (recO) [Bacillus velezensis strain HJ-16]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAACGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGAGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATGTC
GCCTCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z6U2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

88.627

100

0.886

Multiple sequence alignment