Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACE1EH_RS05290 Genome accession   NZ_CP169535
Coordinates   1035618..1036196 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain HJ-16     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1030618..1041196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE1EH_RS05265 (ACE1EH_05265) - 1031118..1031633 (-) 516 WP_369878811.1 methyl-accepting chemotaxis protein -
  ACE1EH_RS05270 (ACE1EH_05270) - 1031877..1032536 (-) 660 Protein_974 protoglobin domain-containing protein -
  ACE1EH_RS05275 (ACE1EH_05275) - 1032533..1034056 (-) 1524 WP_375005167.1 FAD-dependent oxidoreductase -
  ACE1EH_RS05280 (ACE1EH_05280) - 1034181..1035038 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  ACE1EH_RS05285 (ACE1EH_05285) - 1035069..1035302 (-) 234 WP_032874382.1 IDEAL domain-containing protein -
  ACE1EH_RS05290 (ACE1EH_05290) comK 1035618..1036196 (+) 579 WP_003155179.1 competence protein ComK Regulator
  ACE1EH_RS05295 (ACE1EH_05295) - 1036342..1036711 (+) 370 Protein_979 iron chaperone -
  ACE1EH_RS05300 (ACE1EH_05300) - 1036738..1037104 (+) 367 Protein_980 iron chaperone -
  ACE1EH_RS05305 (ACE1EH_05305) - 1037227..1037734 (+) 508 Protein_981 MepB family protein -
  ACE1EH_RS05310 (ACE1EH_05310) - 1037963..1038712 (-) 750 WP_375005477.1 YrpD family protein -
  ACE1EH_RS05315 (ACE1EH_05315) - 1038871..1039140 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  ACE1EH_RS05320 (ACE1EH_05320) - 1039173..1039490 (-) 318 WP_003155166.1 YbjQ family protein -
  ACE1EH_RS05325 (ACE1EH_05325) - 1039532..1041001 (-) 1470 WP_029325959.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=1051848 ACE1EH_RS05290 WP_003155179.1 1035618..1036196(+) (comK) [Bacillus velezensis strain HJ-16]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1051848 ACE1EH_RS05290 WP_003155179.1 1035618..1036196(+) (comK) [Bacillus velezensis strain HJ-16]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTATGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment