Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8618_RS07180 Genome accession   NZ_AP028383
Coordinates   1417335..1417646 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain BCH-11107     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1412335..1422646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8618_RS07160 (B11107_14040) ctsE 1413204..1414763 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  R8618_RS07165 (B11107_14050) ctsX 1414753..1415340 (-) 588 WP_002927587.1 hypothetical protein Machinery gene
  R8618_RS07170 (B11107_14060) ctsP 1415344..1415952 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8618_RS07175 (B11107_14070) ctsD 1415945..1417357 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8618_RS07180 (B11107_14080) ctsR 1417335..1417646 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  R8618_RS07185 (B11107_14090) nifJ 1417670..1421230 (-) 3561 WP_002886267.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8618_RS07190 (B11107_14100) - 1421328..1421966 (-) 639 WP_002927588.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=105184 R8618_RS07180 WP_002855438.1 1417335..1417646(-) (ctsR) [Campylobacter jejuni strain BCH-11107]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=105184 R8618_RS07180 WP_002855438.1 1417335..1417646(-) (ctsR) [Campylobacter jejuni strain BCH-11107]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment