Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACE1EH_RS01775 Genome accession   NZ_CP169535
Coordinates   328586..329023 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain HJ-16     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 323586..334023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE1EH_RS01740 (ACE1EH_01740) - 324440..325642 (+) 1203 WP_375004901.1 GTP-binding protein -
  ACE1EH_RS01745 (ACE1EH_01745) - 325707..326843 (+) 1137 WP_375004902.1 zinc-dependent alcohol dehydrogenase -
  ACE1EH_RS01750 (ACE1EH_01750) - 326858..327292 (+) 435 WP_021494203.1 RDD family protein -
  ACE1EH_RS01755 (ACE1EH_01755) - 327365..327688 (+) 324 WP_375004903.1 YckD family protein -
  ACE1EH_RS01760 (ACE1EH_01760) - 327789..327983 (+) 195 WP_375004904.1 family 1 glycosylhydrolase -
  ACE1EH_RS01765 (ACE1EH_01765) - 327905..328126 (+) 222 Protein_307 family 1 glycosylhydrolase -
  ACE1EH_RS01770 (ACE1EH_01770) nin/comJ 328167..328565 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  ACE1EH_RS01775 (ACE1EH_01775) nucA/comI 328586..329023 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACE1EH_RS01780 (ACE1EH_01780) hxlB 329382..329939 (-) 558 WP_038456922.1 6-phospho-3-hexuloisomerase -
  ACE1EH_RS01785 (ACE1EH_01785) hxlA 329936..330571 (-) 636 WP_088461453.1 3-hexulose-6-phosphate synthase -
  ACE1EH_RS01790 (ACE1EH_01790) - 330803..331165 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=1051837 ACE1EH_RS01775 WP_003156588.1 328586..329023(-) (nucA/comI) [Bacillus velezensis strain HJ-16]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1051837 ACE1EH_RS01775 WP_003156588.1 328586..329023(-) (nucA/comI) [Bacillus velezensis strain HJ-16]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAAAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment