Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACEX67_RS16640 Genome accession   NZ_CP169520
Coordinates   3388587..3389972 (-) Length   461 a.a.
NCBI ID   WP_057080261.1    Uniprot ID   -
Organism   Bacillus velezensis strain CX-H3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3383587..3394972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEX67_RS16605 (ACEX67_16605) flgL 3383762..3384679 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ACEX67_RS16610 (ACEX67_16610) flgK 3384691..3386208 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  ACEX67_RS16615 (ACEX67_16615) - 3386224..3386706 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACEX67_RS16620 (ACEX67_16620) flgM 3386721..3386987 (-) 267 WP_057080258.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACEX67_RS16625 (ACEX67_16625) - 3387057..3387476 (-) 420 WP_057080259.1 TIGR03826 family flagellar region protein -
  ACEX67_RS16630 (ACEX67_16630) comFC 3387550..3388239 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  ACEX67_RS16635 (ACEX67_16635) - 3388245..3388529 (-) 285 WP_057080260.1 late competence development ComFB family protein -
  ACEX67_RS16640 (ACEX67_16640) comFA 3388587..3389972 (-) 1386 WP_057080261.1 DEAD/DEAH box helicase Machinery gene
  ACEX67_RS16645 (ACEX67_16645) - 3390080..3390928 (-) 849 WP_003151387.1 DegV family protein -
  ACEX67_RS16650 (ACEX67_16650) degU 3391026..3391715 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACEX67_RS16655 (ACEX67_16655) degS 3391792..3392955 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACEX67_RS16660 (ACEX67_16660) - 3393178..3393825 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52588.03 Da        Isoelectric Point: 10.2737

>NTDB_id=1051680 ACEX67_RS16640 WP_057080261.1 3388587..3389972(-) (comFA) [Bacillus velezensis strain CX-H3]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEHITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENRWRPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGMTNGMKKAKKHIELMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1051680 ACEX67_RS16640 WP_057080261.1 3388587..3389972(-) (comFA) [Bacillus velezensis strain CX-H3]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACCGTTTTATAGAAAAAGAGCATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAGGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACTTATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627

Multiple sequence alignment