Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8618_RS03280 Genome accession   NZ_AP028383
Coordinates   626468..626905 (+) Length   145 a.a.
NCBI ID   WP_002927921.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11107     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 621468..631905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8618_RS03260 (B11107_06390) kdpD 621956..623887 (+) 1932 WP_002927928.1 sensor histidine kinase -
  R8618_RS03265 (B11107_06400) uvrB 623882..625855 (-) 1974 WP_002855027.1 excinuclease ABC subunit UvrB -
  R8618_RS03270 (B11107_06410) - 626009..626239 (+) 231 WP_002852327.1 hypothetical protein -
  R8618_RS03275 (B11107_06420) - 626229..626471 (+) 243 WP_002927925.1 hypothetical protein -
  R8618_RS03280 (B11107_06430) Cj0683 626468..626905 (+) 438 WP_002927921.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R8618_RS03285 (B11107_06440) priA 626887..628740 (+) 1854 WP_002927918.1 primosomal protein N' -
  R8618_RS03290 cipA 628750..630145 (-) 1396 Protein_635 DUF2972 domain-containing protein -
  R8618_RS03295 (B11107_06470) ispG 630288..631361 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16784.81 Da        Isoelectric Point: 8.4560

>NTDB_id=105166 R8618_RS03280 WP_002927921.1 626468..626905(+) (Cj0683) [Campylobacter jejuni strain BCH-11107]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNRYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=105166 R8618_RS03280 WP_002927921.1 626468..626905(+) (Cj0683) [Campylobacter jejuni strain BCH-11107]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCGCTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993

Multiple sequence alignment