Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACE01E_RS15970 Genome accession   NZ_CP169509
Coordinates   3238189..3238794 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Infantis strain FSIS9799     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3233189..3243794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE01E_RS15955 (ACE01E_15955) helD 3233406..3235460 (-) 2055 WP_023993506.1 DNA helicase IV -
  ACE01E_RS15960 (ACE01E_15960) - 3235584..3236030 (+) 447 WP_023993507.1 YccF domain-containing protein -
  ACE01E_RS15965 (ACE01E_15965) yccS 3236049..3238202 (+) 2154 WP_000950876.1 YccS family putative transporter -
  ACE01E_RS15970 (ACE01E_15970) sxy/tfoX 3238189..3238794 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  ACE01E_RS15975 (ACE01E_15975) sulA 3239011..3239520 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  ACE01E_RS15980 (ACE01E_15980) ompA 3239877..3240929 (+) 1053 WP_001670727.1 porin OmpA -
  ACE01E_RS15985 (ACE01E_15985) matP 3241001..3241453 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  ACE01E_RS15990 (ACE01E_15990) - 3241639..3243399 (+) 1761 WP_000156457.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=1051517 ACE01E_RS15970 WP_001202375.1 3238189..3238794(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Infantis strain FSIS9799]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1051517 ACE01E_RS15970 WP_001202375.1 3238189..3238794(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Infantis strain FSIS9799]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment