Detailed information NTG0105119

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: R8634_RS05995
• Genome accession: NZ_AP028381
• Coordinates: 1151755..1152714 (+)
• Length: 319 a.a.
• NCBI ID: WP_052804061.1
• Uniprot ID: A0A5Y8UKK4
• Organism: Campylobacter jejuni strain BCH-11000
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1146755..1157714

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8634_RS05970 (B11000_11750)	neuC	1147348..1148472 (+)	1125	WP_052805597.1	UDP-N-acetylglucosamine 2-epimerase	-
R8634_RS05975 (B11000_11760)	-	1148465..1149412 (+)	948	WP_317655921.1	beta-1,4-N-acetylgalactosaminyltransferase	-
R8634_RS05980 (B11000_11770)	-	1149409..1150074 (+)	666	WP_002871705.1	cytidylyltransferase domain-containing protein	-
R8634_RS05985 (B11000_11780)	-	1150062..1150892 (+)	831	WP_057042852.1	CatB-related O-acetyltransferase	-
R8634_RS05990 (B11000_11790)	waaV	1150884..1151696 (-)	813	WP_002920285.1	glycosyltransferase family 2 protein	-
R8634_RS05995 (B11000_11800)	waaF	1151755..1152714 (+)	960	WP_052804061.1	lipopolysaccharide heptosyltransferase II	Regulator
R8634_RS06000 (B11000_11810)	gmhA	1152695..1153255 (-)	561	WP_057042846.1	D-sedoheptulose 7-phosphate isomerase	-
R8634_RS06005 (B11000_11820)	rfaE1	1153252..1154637 (-)	1386	WP_052804062.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
R8634_RS06010 (B11000_11830)	rfaD	1154630..1155583 (-)	954	WP_215484827.1	ADP-glyceromanno-heptose 6-epimerase	-
R8634_RS06015 (B11000_11840)	gmhB	1155584..1156145 (-)	562	Protein_1165	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
R8634_RS06020 (B11000_11850)	-	1156226..1156528 (+)	303	WP_002852762.1	c-type cytochrome	-
R8634_RS06025 (B11000_11860)	ccoS	1156551..1156757 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36583.01 Da
• Isoelectric Point: 10.1941

>NTDB_id=105119 R8634_RS05995 WP_052804061.1 1151755..1152714(+) (waaF) [Campylobacter jejuni strain BCH-11000]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFEEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPQKVIEEARNLLKNSHR

Nucleotide

• Length: 960 bp

>NTDB_id=105119 R8634_RS05995 WP_052804061.1 1151755..1152714(+) (waaF) [Campylobacter jejuni strain BCH-11000]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTGAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAAGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

3D structure

• AlphaFold DB: A0A5Y8UKK4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.654	99.687	0.944