Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8580_RS07145 Genome accession   NZ_AP028380
Coordinates   1404717..1405028 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10998     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1399717..1410028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8580_RS07125 (B10998_13940) ctsE 1400586..1402145 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  R8580_RS07130 (B10998_13950) ctsX 1402135..1402722 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  R8580_RS07135 (B10998_13960) ctsP 1402726..1403334 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  R8580_RS07140 (B10998_13970) ctsD 1403327..1404739 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8580_RS07145 (B10998_13980) ctsR 1404717..1405028 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  R8580_RS07150 (B10998_13990) nifJ 1405052..1408612 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8580_RS07155 (B10998_14000) - 1408705..1409346 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=105105 R8580_RS07145 WP_002862131.1 1404717..1405028(-) (ctsR) [Campylobacter jejuni strain BCH-10998]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=105105 R8580_RS07145 WP_002862131.1 1404717..1405028(-) (ctsR) [Campylobacter jejuni strain BCH-10998]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment