Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACEWX4_RS01130 Genome accession   NZ_CP169369
Coordinates   237356..238924 (-) Length   522 a.a.
NCBI ID   WP_168406383.1    Uniprot ID   -
Organism   Acinetobacter indicus strain AIBD14     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 232356..243924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEWX4_RS01115 (ACEWX4_01115) gpmI 233172..234719 (+) 1548 WP_005181570.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACEWX4_RS01120 (ACEWX4_01120) - 234743..235912 (+) 1170 WP_005181572.1 S41 family peptidase -
  ACEWX4_RS01125 (ACEWX4_01125) pilR 235929..237284 (-) 1356 WP_171526345.1 sigma-54 dependent transcriptional regulator Regulator
  ACEWX4_RS01130 (ACEWX4_01130) pilS 237356..238924 (-) 1569 WP_168406383.1 PAS domain-containing sensor histidine kinase Regulator
  ACEWX4_RS01135 (ACEWX4_01135) - 238939..239574 (-) 636 WP_005181577.1 response regulator -
  ACEWX4_RS01140 (ACEWX4_01140) - 239792..240874 (+) 1083 WP_127799456.1 serine hydrolase -
  ACEWX4_RS01145 (ACEWX4_01145) thrC 240967..242112 (-) 1146 WP_005181581.1 threonine synthase -
  ACEWX4_RS01150 (ACEWX4_01150) - 242170..243474 (-) 1305 WP_016659702.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59969.61 Da        Isoelectric Point: 7.1647

>NTDB_id=1051044 ACEWX4_RS01130 WP_168406383.1 237356..238924(-) (pilS) [Acinetobacter indicus strain AIBD14]
MDIRRTQAELNQYHLGLWYGAYRLIIAFCLLLIYLLTTQTLNHDYQHPRLYAASLVLYFIFSCAQLLYFRYVRHRIPLQL
TLIFSVDVLVLSSLTFALDGPSLHLSLLFVIAIFAATLLLEKSKALFITLVAMICVTYQHFVGTLLDFSSLDRIGQSALL
SFLFFIIYRFGQIAVRRFQILEHLNFSQSLELNRLKNINRYILEQTDMGYLVLDENCHIMVSNPAACHLLGINPLYAFDK
YPLYKVQPDLFQLLQFDQLSNGEKFQFESQLSHFLIQIQVQKLVVPQQTLTLLVLQDARQINQRVQQLKLAALGQLSASI
AHEIRNPLAAIVQANRLLAGSDTNQQQMLSQMIDKQSQRIDKIIDDTLSMVKNKETTPVQIDLARFIPQLIQDDLADLAS
QIQVSQAEPLQILFDESQLRQVLINLIRNAQRHNAPDHPIELQLYRQQDTVYMDVKDYGSGVASHDIRYLFQPFFSTEIS
GTGLGLYLSHSFCEANRAKLRYVEQKQGACFRIECSPVDVNK

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=1051044 ACEWX4_RS01130 WP_168406383.1 237356..238924(-) (pilS) [Acinetobacter indicus strain AIBD14]
ATGGATATCCGCCGTACGCAAGCTGAACTGAACCAGTACCATCTCGGGCTATGGTACGGGGCGTATCGGCTGATAATTGC
CTTCTGTTTGCTGCTGATTTATTTACTCACCACTCAAACTCTCAATCATGATTATCAGCATCCACGGCTGTATGCCGCCA
GTCTGGTGCTGTATTTTATTTTTAGCTGTGCCCAGCTGCTGTATTTTCGCTATGTCCGGCACAGGATTCCGCTACAACTC
ACGCTGATTTTCAGTGTTGATGTACTGGTGCTCAGCAGCCTGACCTTTGCGCTGGATGGACCGAGCCTGCATTTAAGCCT
GCTGTTTGTGATTGCGATTTTCGCCGCGACGTTATTGCTGGAAAAAAGCAAGGCGCTGTTCATTACCCTGGTGGCAATGA
TTTGTGTCACCTATCAGCATTTTGTTGGCACATTACTGGATTTTTCCTCTCTGGATCGCATCGGGCAAAGTGCCCTGCTC
TCGTTCCTGTTTTTTATTATTTACCGTTTTGGCCAGATTGCCGTCCGCCGTTTCCAGATTCTGGAGCACCTGAACTTTTC
CCAATCACTGGAACTGAACCGGCTAAAGAATATTAACCGCTATATTCTGGAACAGACCGATATGGGCTATCTGGTGCTGG
ATGAAAACTGCCATATTATGGTCAGTAATCCGGCCGCCTGCCATTTGCTGGGTATTAATCCGCTGTATGCTTTCGACAAA
TATCCACTGTATAAAGTACAGCCCGACCTGTTTCAATTATTGCAATTTGACCAGCTCTCTAACGGCGAAAAATTCCAGTT
TGAATCGCAGCTCAGTCATTTCCTGATCCAGATTCAGGTACAAAAGCTGGTGGTGCCGCAGCAGACCTTAACCTTGCTGG
TGCTGCAGGATGCACGGCAAATCAACCAGCGTGTGCAGCAACTAAAACTGGCAGCACTGGGCCAGCTTTCGGCCAGTATT
GCCCATGAAATCCGTAATCCGCTGGCGGCCATTGTCCAGGCCAATCGCCTGCTGGCTGGCAGCGATACCAATCAGCAGCA
GATGCTGAGCCAGATGATTGACAAGCAGTCGCAGCGCATTGACAAGATCATTGATGACACCCTGAGCATGGTTAAAAATA
AGGAAACCACACCGGTGCAGATTGATCTGGCGCGTTTTATTCCGCAGCTGATCCAGGATGATCTGGCCGATCTGGCCAGC
CAGATTCAGGTCAGCCAGGCCGAACCTCTGCAGATTCTGTTTGATGAATCCCAGCTGCGTCAGGTGCTGATTAACCTGAT
CCGTAATGCCCAGCGCCACAATGCGCCGGATCATCCGATTGAACTGCAACTTTATCGCCAGCAGGACACGGTCTATATGG
ATGTCAAAGATTATGGCAGCGGCGTGGCTTCACATGATATTCGCTACCTGTTTCAACCATTTTTTAGTACCGAAATTAGT
GGAACTGGTTTAGGATTATACTTATCACATAGTTTCTGCGAGGCCAATCGGGCCAAGTTGCGCTATGTAGAACAAAAACA
AGGAGCATGTTTCAGGATTGAATGCTCACCTGTTGACGTAAATAAATAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.406

96.743

0.575

Multiple sequence alignment