Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   O1Q80_RS06245 Genome accession   NZ_CP169368
Coordinates   1321414..1322367 (+) Length   317 a.a.
NCBI ID   WP_386685906.1    Uniprot ID   -
Organism   Lonepinella sp. MS14435     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1316414..1327367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q80_RS06220 (O1Q80_01239) - 1316779..1317609 (+) 831 WP_386685896.1 SirB1 family protein -
  O1Q80_RS06225 (O1Q80_01240) kdsA 1317622..1318476 (+) 855 WP_386685898.1 3-deoxy-8-phosphooctulonate synthase -
  O1Q80_RS06230 (O1Q80_01241) sfsA 1318687..1319403 (-) 717 WP_386693757.1 DNA/RNA nuclease SfsA -
  O1Q80_RS06235 (O1Q80_01242) - 1319490..1319759 (+) 270 WP_386685902.1 YcgL domain-containing protein -
  O1Q80_RS06240 (O1Q80_01243) mepM 1319828..1321279 (+) 1452 WP_386693760.1 murein DD-endopeptidase MepM -
  O1Q80_RS06245 (O1Q80_01244) ceuB 1321414..1322367 (+) 954 WP_386685906.1 ABC transporter permease Machinery gene
  O1Q80_RS06250 (O1Q80_01245) - 1322378..1323334 (+) 957 WP_386693762.1 iron chelate uptake ABC transporter family permease subunit -
  O1Q80_RS06255 (O1Q80_01246) - 1323341..1324102 (+) 762 WP_386685910.1 ABC transporter ATP-binding protein -
  O1Q80_RS06260 (O1Q80_01247) - 1324138..1325049 (+) 912 WP_386693764.1 siderophore ABC transporter substrate-binding protein -
  O1Q80_RS06265 (O1Q80_01248) ompA 1325419..1326477 (+) 1059 WP_386685914.1 porin OmpA -
  O1Q80_RS06270 (O1Q80_01249) - 1326564..1327145 (+) 582 WP_386685916.1 LemA family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34641.75 Da        Isoelectric Point: 9.6038

>NTDB_id=1051026 O1Q80_RS06245 WP_386685906.1 1321414..1322367(+) (ceuB) [Lonepinella sp. MS14435]
MIKRRYLFLLVILLSVLSLFIGVSTVNLAGLLAFDGEQWEIFLISRVPRLVSILIAGAALSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILIAILLFPSASMLVKTSIAIAVSFLGTLLFMTILSRLKFKDSIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLAGWLQGDFSLVMAGRYEILYFSLPALIIAYLFANRFSIVGMGEEFATNLGLNYQQVLYLGLAIVATVSSIIIVSVG
VIPFLGLIVPNLVTLYLGDNLKKILSHTALLGAVFVLFCDILGRIVIYPYEISINAVVGVFGSAMFLILLFKRYQQG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1051026 O1Q80_RS06245 WP_386685906.1 1321414..1322367(+) (ceuB) [Lonepinella sp. MS14435]
TTGATTAAACGCCGTTACTTATTTTTACTGGTTATTTTGCTTTCTGTATTATCGCTTTTTATCGGCGTTAGTACGGTCAA
TCTTGCTGGTTTATTAGCCTTTGACGGTGAGCAATGGGAAATTTTTTTGATTAGTCGTGTACCACGTTTAGTCAGTATTT
TAATTGCTGGAGCCGCTTTAAGTATTTGTGGCTTAGTCATGCAGCAATTAAGTCGTAACCGTTTTGTTTCACCCACTACT
GCTGGCACAATGGACAGTGCAAGATTAGGTATTTTAATTGCTATTTTACTGTTTCCGTCTGCCTCAATGCTAGTTAAAAC
CAGTATTGCCATTGCCGTATCTTTCTTAGGGACGTTGTTATTTATGACGATTTTATCCCGTCTAAAATTTAAAGATAGCA
TTTTTGTTCCCTTAGTGGGGATTATGTTTGGTAATATTATCAGTTCAATTACCGCTTTTATTGCCTATAAAGAAGATCTT
TTGCAAAACTTGGCAGGTTGGTTACAAGGGGACTTTTCTTTAGTGATGGCAGGGCGTTATGAAATCCTTTATTTTAGTTT
ACCTGCGTTAATTATAGCTTATTTGTTTGCTAACCGTTTTTCCATTGTAGGAATGGGGGAAGAATTTGCCACAAATCTCG
GGTTAAATTATCAACAGGTTCTGTATTTAGGATTAGCCATTGTGGCGACCGTTTCTTCAATTATTATTGTATCGGTCGGC
GTGATTCCCTTTTTAGGTTTAATCGTACCGAATTTAGTTACCCTTTATTTAGGTGATAATCTGAAAAAAATTCTGTCACA
TACCGCCTTGCTTGGTGCGGTATTTGTACTGTTCTGTGATATTTTAGGGCGTATTGTGATTTATCCTTATGAAATTTCGA
TTAATGCTGTAGTAGGTGTATTTGGCAGTGCGATGTTCTTAATTTTATTATTTAAACGTTATCAACAGGGTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.074

97.476

0.517

Multiple sequence alignment