Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   O1Q82_RS06980 Genome accession   NZ_CP169367
Coordinates   1465686..1468073 (-) Length   795 a.a.
NCBI ID   WP_386686472.1    Uniprot ID   -
Organism   Lonepinella sp. MS14437     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1460686..1473073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q82_RS06960 (O1Q82_01391) - 1461343..1461969 (-) 627 WP_386686464.1 YidB family protein -
  O1Q82_RS06965 (O1Q82_01392) kdsB 1462059..1462832 (-) 774 WP_386686466.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  O1Q82_RS06970 (O1Q82_01393) lpxK 1462829..1463821 (-) 993 WP_386686468.1 tetraacyldisaccharide 4'-kinase -
  O1Q82_RS06975 (O1Q82_01394) msbA 1463877..1465625 (-) 1749 WP_386686470.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  O1Q82_RS06980 (O1Q82_01395) rec2 1465686..1468073 (-) 2388 WP_386686472.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  O1Q82_RS06985 (O1Q82_01396) dksA 1468362..1468808 (+) 447 WP_386686474.1 RNA polymerase-binding protein DksA -
  O1Q82_RS06990 (O1Q82_01397) pcnB 1469085..1470341 (+) 1257 WP_386686476.1 polynucleotide adenylyltransferase PcnB -
  O1Q82_RS06995 (O1Q82_01398) folK 1470345..1470833 (+) 489 WP_386686478.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  O1Q82_RS07000 (O1Q82_01399) - 1471074..1473005 (+) 1932 WP_386686481.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 91222.83 Da        Isoelectric Point: 9.6029

>NTDB_id=1051001 O1Q82_RS06980 WP_386686472.1 1465686..1468073(-) (rec2) [Lonepinella sp. MS14437]
MQRILELIRQLDIDEVAFCAILSVLSLYFLPERFLFCWQLCLLLFSLLLIMRLAIKKPQFIIKWINRILILLVFIGYAHF
IALNSLQQAQIFPQKIQTTFRIVEIHHQGDYQSLVLQTEQPNRRIYATWKVSQSPKLGELWQGELQLRPISSRLNISGFD
RQIWYFAKDIQAWGTVKSAVKITQDFSWREQRLADSLMQTQGLTQQGLLLALGFGERAWLNPDTWKIYQQTNTAHLIAIS
GLHIGLAMALGFCFGRVVQYMLPTPKITPIFPLCCGVVSALFYANLAGFAIPTLRASIALLILILLHFYRAYCTAWQLYF
RIVAVLLLYDPLMILSTSFWLSIGAVGCLILWYQLFPLHLLRWRGLPLSSKVRWILALFHLQLGLFCLFTPIQLAFFNGF
SLQGFWANLLIVPLYSFLLVPVVLFAVFSNGSLYSWRLADFVADKITDLLSLFQHGWLSLSYLQSAYFNTLLAFLIWGML
YKIYTSNRKNISYHKKPRCFSLKSDRSLSPILYARVQKGILLFILANGLQPLWHYFNQSDWQIDTLDVGQGLATLIVKNQ
RGILYDTGASWQGGSMAELEIIPYLQRQGITLDYLIISHDDNDHAGGARAILQAFPQAMLVSPSQKNYSEKHRTFCQAEK
QWLWQGIQIKVLSPKQIVERADNFHSCVLWLEKDKHSLLLTGDADIATERQILPLLNKVEVLQVGHHGSKTSTGQGFVNK
LQPDIALISSGRWNPWHFPNRSVMERLQQAQSAVYNTAISGQISVRFYAEQTKVVTARNAFSPWYQQIIDVQHSD

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=1051001 O1Q82_RS06980 WP_386686472.1 1465686..1468073(-) (rec2) [Lonepinella sp. MS14437]
ATGCAGAGAATATTGGAATTAATCCGTCAATTAGATATAGATGAAGTTGCTTTTTGTGCGATTTTATCTGTGTTGTCTTT
GTATTTTCTACCTGAAAGATTTTTATTCTGTTGGCAACTTTGTTTACTTTTATTTTCCCTTTTGCTCATCATGCGACTGG
CGATCAAAAAACCACAATTTATTATAAAATGGATTAACAGGATATTGATTCTATTAGTATTTATTGGTTATGCTCATTTC
ATTGCTCTGAATTCCTTACAACAAGCCCAAATTTTCCCACAAAAAATTCAAACCACTTTTCGTATTGTGGAAATTCATCA
TCAGGGAGATTATCAATCTTTGGTATTGCAAACTGAACAACCCAACAGACGAATTTATGCAACTTGGAAAGTATCTCAAT
CTCCCAAATTAGGTGAATTATGGCAAGGCGAATTACAACTTAGACCAATTTCATCTCGCCTAAATATCAGTGGCTTTGAT
CGACAAATATGGTATTTTGCCAAAGATATTCAGGCATGGGGAACGGTAAAAAGTGCGGTGAAAATTACACAAGATTTTTC
TTGGCGAGAACAGCGTTTGGCGGACAGTTTGATGCAAACGCAAGGATTGACACAGCAAGGATTATTATTAGCCTTAGGGT
TTGGTGAACGGGCTTGGTTAAATCCCGATACGTGGAAAATTTATCAGCAAACTAATACTGCTCATCTCATTGCTATTTCG
GGGTTGCATATTGGTTTGGCGATGGCTCTTGGTTTTTGTTTCGGGCGAGTGGTGCAATATATGTTACCCACTCCAAAAAT
TACCCCGATTTTTCCGTTATGCTGTGGTGTTGTATCAGCCTTATTTTATGCTAATTTAGCGGGGTTCGCCATTCCTACAT
TGCGAGCTAGTATAGCATTATTGATTTTGATCTTATTGCATTTTTATCGAGCTTATTGTACCGCTTGGCAACTGTATTTT
CGCATTGTTGCAGTATTATTACTCTACGATCCATTGATGATTTTATCCACCAGTTTTTGGTTATCAATCGGTGCGGTGGG
TTGTTTAATTTTGTGGTATCAACTTTTTCCATTGCATTTACTTAGATGGCGAGGTTTACCGTTATCTTCCAAAGTGCGGT
GGATTTTGGCATTGTTTCATTTGCAACTGGGGCTATTTTGCTTATTTACCCCAATTCAATTAGCCTTTTTCAATGGTTTT
TCATTGCAAGGTTTTTGGGCAAATTTATTGATCGTTCCCTTATACAGTTTTTTGCTTGTGCCAGTCGTTTTATTTGCAGT
GTTTAGCAATGGTAGTTTGTATAGTTGGCGACTGGCGGATTTCGTTGCCGATAAGATTACGGATTTATTATCTTTGTTTC
AACACGGTTGGTTAAGTTTATCTTATTTGCAGAGTGCTTATTTTAATACCCTACTAGCTTTTTTAATATGGGGAATGTTG
TATAAAATCTATACTTCGAATAGGAAAAATATAAGTTATCACAAAAAACCACGTTGTTTTTCCTTAAAATCCGATCGTAG
TTTATCACCAATACTTTATGCTCGAGTACAAAAAGGCATCTTATTGTTCATATTGGCAAATGGACTACAACCTTTATGGC
ATTATTTTAATCAATCTGACTGGCAAATAGATACCCTTGATGTTGGGCAAGGATTAGCCACCTTAATCGTGAAAAATCAA
CGGGGGATTTTGTATGATACTGGGGCAAGCTGGCAAGGGGGAAGTATGGCTGAACTGGAAATTATTCCGTATTTACAACG
ACAAGGCATTACTTTAGATTATCTGATTATTAGTCATGATGATAACGATCATGCGGGCGGTGCAAGAGCAATATTACAAG
CATTTCCACAAGCAATGTTGGTAAGCCCTTCACAAAAAAACTATAGCGAAAAACACCGCACTTTTTGCCAAGCAGAAAAA
CAATGGCTGTGGCAAGGCATACAAATTAAAGTGTTATCGCCAAAGCAAATTGTAGAAAGGGCAGATAATTTTCATTCTTG
TGTATTATGGTTGGAAAAAGATAAACATAGCTTGTTGCTAACAGGGGATGCGGATATTGCCACTGAACGACAAATTTTAC
CTTTACTAAATAAAGTAGAAGTGTTGCAAGTTGGGCATCATGGTAGTAAGACCTCTACAGGGCAGGGATTTGTTAATAAG
CTGCAACCTGATATTGCGTTAATTTCCAGTGGTCGTTGGAATCCGTGGCACTTTCCAAATAGATCTGTTATGGAACGTTT
ACAGCAGGCTCAAAGTGCGGTGTATAACACGGCAATTTCAGGGCAAATTTCGGTGCGATTTTATGCAGAACAAACAAAAG
TTGTAACCGCCAGAAATGCGTTTAGTCCTTGGTATCAACAGATTATTGATGTTCAACATAGTGATTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(212-480)

Metallo-beta-lactamase superfamily (Lactamase_B)

(547-729)

Domain of unknown function (DUF4131) (DUF4131)

(38-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.571

96.101

0.496

Multiple sequence alignment