Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   O1Q82_RS04320 Genome accession   NZ_CP169367
Coordinates   898209..898505 (+) Length   98 a.a.
NCBI ID   WP_386689782.1    Uniprot ID   -
Organism   Lonepinella sp. MS14437     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 893209..903505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q82_RS04275 (O1Q82_00854) pal 893715..894173 (+) 459 WP_386689769.1 peptidoglycan-associated lipoprotein Pal -
  O1Q82_RS04300 (O1Q82_00859) - 895049..896125 (+) 1077 WP_386689772.1 IS256 family transposase -
  O1Q82_RS04305 (O1Q82_00860) comN 896281..896805 (+) 525 WP_386689775.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  O1Q82_RS04310 (O1Q82_00861) - 896802..897533 (+) 732 WP_386689778.1 hypothetical protein -
  O1Q82_RS04315 (O1Q82_00862) - 897539..898225 (+) 687 WP_386689780.1 DUF2572 family protein -
  O1Q82_RS04320 (O1Q82_00863) comQ 898209..898505 (+) 297 WP_386689782.1 DUF5374 domain-containing protein Machinery gene
  O1Q82_RS04325 (O1Q82_00864) recC 898539..901934 (+) 3396 WP_386689785.1 exodeoxyribonuclease V subunit gamma -
  O1Q82_RS04330 (O1Q82_00865) - 902007..903227 (+) 1221 WP_386689788.1 ROK family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11186.13 Da        Isoelectric Point: 9.6302

>NTDB_id=1050997 O1Q82_RS04320 WP_386689782.1 898209..898505(+) (comQ) [Lonepinella sp. MS14437]
MILFPKFKQGMGLVTLLVALSLFSGIFLAINQWANIQRKTASEIYQRYQAIQIAENQQQRQFLGLNCESGVEQNQLKFSM
NCIGDKVKVRYILGEISL

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1050997 O1Q82_RS04320 WP_386689782.1 898209..898505(+) (comQ) [Lonepinella sp. MS14437]
ATGATTTTATTCCCTAAATTCAAGCAAGGAATGGGGCTTGTAACCTTATTAGTGGCGTTGAGCCTATTTAGTGGTATTTT
TCTTGCTATTAATCAATGGGCGAATATTCAACGCAAAACAGCAAGTGAAATTTATCAACGTTATCAAGCGATTCAAATAG
CGGAAAATCAACAGCAACGACAATTTTTAGGATTAAATTGTGAAAGTGGAGTAGAGCAAAATCAACTGAAATTCTCCATG
AATTGCATTGGGGATAAGGTAAAAGTGCGGTATATTTTGGGGGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(59-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

51.042

97.959

0.5

Multiple sequence alignment