Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   O1Q82_RS04305 Genome accession   NZ_CP169367
Coordinates   896281..896805 (+) Length   174 a.a.
NCBI ID   WP_386689775.1    Uniprot ID   -
Organism   Lonepinella sp. MS14437     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 895049..896125 896281..896805 flank 156


Gene organization within MGE regions


Location: 895049..896805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q82_RS04300 (O1Q82_00859) - 895049..896125 (+) 1077 WP_386689772.1 IS256 family transposase -
  O1Q82_RS04305 (O1Q82_00860) comN 896281..896805 (+) 525 WP_386689775.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19961.94 Da        Isoelectric Point: 8.4799

>NTDB_id=1050996 O1Q82_RS04305 WP_386689775.1 896281..896805(+) (comN) [Lonepinella sp. MS14437]
MKSGFTLFEMLIVLLIISIISLISMPAWQSDSQRILAKEQHRLYLFLRQVQARVENSTQIWYLILNRDIGQQRWCVTAQI
KSDTTCDCFNPSFCPDNLSAQFYYPFSLQKTMITAKAYYPQKLISFNGTRNSSDSGCFMLQNSQSRTLFSLSNLGRIRLK
SDQAENACNAGVEE

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1050996 O1Q82_RS04305 WP_386689775.1 896281..896805(+) (comN) [Lonepinella sp. MS14437]
ATGAAAAGTGGTTTTACCTTATTTGAAATGCTTATTGTTTTGCTGATTATTAGCATCATATCTTTAATTAGCATGCCTGC
ATGGCAAAGTGATAGCCAACGAATTTTAGCCAAAGAACAACACCGTTTATATCTATTCTTACGCCAAGTTCAAGCCAGAG
TAGAAAATTCTACTCAAATCTGGTATCTCATTCTCAATCGAGATATTGGTCAGCAACGCTGGTGTGTTACCGCTCAAATT
AAGTCAGATACGACTTGCGATTGCTTTAATCCCAGTTTTTGTCCTGATAACCTTTCGGCTCAGTTTTATTATCCTTTTAG
TTTACAAAAAACCATGATTACTGCTAAAGCCTATTATCCACAAAAATTAATCAGTTTTAATGGCACGAGAAATTCATCAG
ATTCAGGCTGTTTTATGTTGCAAAATTCGCAATCTCGTACCTTATTTTCTCTTTCTAACTTAGGACGAATCCGTTTGAAA
AGCGATCAAGCCGAGAATGCCTGCAATGCTGGAGTAGAAGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

51.765

97.701

0.506

Multiple sequence alignment