Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ABGU60_RS04200 Genome accession   NZ_OZ040764
Coordinates   868691..869887 (-) Length   398 a.a.
NCBI ID   WP_001161853.1    Uniprot ID   -
Organism   Escherichia coli isolate 30224_1#38     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 863691..874887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU60_RS04190 - 865965..867338 (+) 1374 WP_001546116.1 bifunctional cytidylyltransferase/SDR family oxidoreductase -
  ABGU60_RS04195 - 867355..868491 (+) 1137 WP_000115757.1 hypothetical protein -
  ABGU60_RS04200 kpsS 868691..869887 (-) 1197 WP_001161853.1 capsule biosynthesis protein Regulator
  ABGU60_RS04205 - 869922..871949 (-) 2028 WP_001546115.1 capsular polysaccharide biosynthesis protein -
  ABGU60_RS04210 kdsB 871946..872686 (-) 741 WP_000030748.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABGU60_RS04215 - 872696..874372 (-) 1677 WP_001546114.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 47279.63 Da        Isoelectric Point: 10.0630

>NTDB_id=1050962 ABGU60_RS04200 WP_001161853.1 868691..869887(-) (kpsS) [Escherichia coli isolate 30224_1#38]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLTPSTM
KRIGHAMWYYLIGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGGRCFTITL

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=1050962 ABGU60_RS04200 WP_001161853.1 868691..869887(-) (kpsS) [Escherichia coli isolate 30224_1#38]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAG
TGATGTCGCCGAGTGGCTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTATTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACATTATCTGGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTGCGAGATCTCCACCGGCAATATGAC
TTTGACACTATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGTATCCG
CTTCCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCATGTTGAGAACTTAACACCTTCAACAATG
AAACGTATTGGCCATGCGATGTGGTATTACCTGATAGGCTGGCATTACCGTCATGAGTTTCCTCGCTATCGCCATCACAA
ATCATTTTCTCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTACGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTTAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGGTAGATGTTTTACCATAACATTATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.103

97.739

0.392