Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | R8580_RS05220 | Genome accession | NZ_AP028380 |
| Coordinates | 1016214..1016516 (+) | Length | 100 a.a. |
| NCBI ID | WP_002877750.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain BCH-10998 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1011214..1021516
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8580_RS05195 (B10998_10110) | rpsR | 1011576..1011836 (+) | 261 | WP_002853032.1 | 30S ribosomal protein S18 | - |
| R8580_RS05200 (B10998_10120) | lon | 1011897..1014272 (-) | 2376 | WP_002868636.1 | endopeptidase La | - |
| R8580_RS05205 (B10998_10130) | bamD | 1014289..1014936 (-) | 648 | WP_002877748.1 | outer membrane protein assembly factor BamD | - |
| R8580_RS05210 (B10998_10140) | fliW | 1015097..1015486 (+) | 390 | WP_002877749.1 | flagellar assembly protein FliW | - |
| R8580_RS05215 (B10998_10150) | proC | 1015486..1016217 (+) | 732 | WP_002855729.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| R8580_RS05220 (B10998_10160) | ctsT | 1016214..1016516 (+) | 303 | WP_002877750.1 | hypothetical protein | Machinery gene |
| R8580_RS05225 (B10998_10170) | - | 1016513..1017175 (+) | 663 | WP_002877751.1 | hypothetical protein | - |
| R8580_RS05230 (B10998_10180) | - | 1017172..1017624 (+) | 453 | WP_002877757.1 | hypothetical protein | - |
| R8580_RS05235 (B10998_10190) | hemD | 1017621..1018250 (-) | 630 | WP_002877758.1 | uroporphyrinogen-III synthase | - |
| R8580_RS05240 (B10998_10200) | thiE | 1018228..1018860 (-) | 633 | WP_002877759.1 | thiamine phosphate synthase | - |
| R8580_RS05245 (B10998_10210) | thiD | 1018850..1019662 (-) | 813 | WP_002877760.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| R8580_RS05250 (B10998_10220) | - | 1019659..1020345 (-) | 687 | WP_002866108.1 | endonuclease III domain-containing protein | - |
| R8580_RS05255 (B10998_10230) | - | 1020342..1021103 (-) | 762 | WP_002856328.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 12138.20 Da Isoelectric Point: 7.0039
>NTDB_id=105090 R8580_RS05220 WP_002877750.1 1016214..1016516(+) (ctsT) [Campylobacter jejuni strain BCH-10998]
MKKAFILIESISAITIISLIFIGIFYHYTQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFINDG
IFQFQKLYFQDQNYSVYFKE
MKKAFILIESISAITIISLIFIGIFYHYTQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFINDG
IFQFQKLYFQDQNYSVYFKE
Nucleotide
Download Length: 303 bp
>NTDB_id=105090 R8580_RS05220 WP_002877750.1 1016214..1016516(+) (ctsT) [Campylobacter jejuni strain BCH-10998]
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATCA
CTATACTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTATTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGTGTTTATTTTAAAGAATGA
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATCA
CTATACTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTATTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGTGTTTATTTTAAAGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
98 |
100 |
0.98 |