Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8580_RS03235 Genome accession   NZ_AP028380
Coordinates   627076..627513 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain BCH-10998     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 622076..632513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8580_RS03215 (B10998_06280) kdpD 622564..624495 (+) 1932 WP_100644247.1 sensor histidine kinase -
  R8580_RS03220 (B10998_06290) uvrB 624490..626463 (-) 1974 WP_014516973.1 excinuclease ABC subunit UvrB -
  R8580_RS03225 (B10998_06300) - 626617..626847 (+) 231 WP_002852327.1 hypothetical protein -
  R8580_RS03230 (B10998_06310) - 626837..627079 (+) 243 WP_002854947.1 hypothetical protein -
  R8580_RS03235 (B10998_06320) Cj0683 627076..627513 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R8580_RS03240 (B10998_06330) priA 627495..629348 (+) 1854 WP_002877679.1 primosomal protein N' -
  R8580_RS03245 (B10998_06340) - 629341..630099 (-) 759 WP_002877674.1 CTP:phosphoglutamine cytidylyltransferase -
  R8580_RS03250 (B10998_06350) - 630101..630703 (-) 603 WP_002877673.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=105087 R8580_RS03235 WP_002852324.1 627076..627513(+) (Cj0683) [Campylobacter jejuni strain BCH-10998]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=105087 R8580_RS03235 WP_002852324.1 627076..627513(+) (Cj0683) [Campylobacter jejuni strain BCH-10998]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment