Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU74_RS00645 Genome accession   NZ_OZ040756
Coordinates   136378..137046 (+) Length   222 a.a.
NCBI ID   WP_001296533.1    Uniprot ID   B7N279
Organism   Escherichia coli isolate 30859_5#287     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 131378..142046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU74_RS00615 yicC 131397..132260 (-) 864 WP_000621332.1 YicC/YloC family endoribonuclease -
  ABGU74_RS00620 rph 132387..133103 (+) 717 WP_001247093.1 ribonuclease PH -
  ABGU74_RS00625 pyrE 133169..133810 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  ABGU74_RS00630 slmA 133847..134443 (-) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  ABGU74_RS00635 dut 134550..135008 (-) 459 WP_000976070.1 dUTP diphosphatase -
  ABGU74_RS00640 coaBC 134986..136206 (-) 1221 WP_000050112.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ABGU74_RS00645 radC 136378..137046 (+) 669 WP_001296533.1 DNA repair protein RadC Machinery gene
  ABGU74_RS00650 rpmB 137263..137499 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  ABGU74_RS00655 rpmG 137520..137687 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  ABGU74_RS00660 mutM 137785..138594 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ABGU74_RS00665 coaD 138633..139112 (-) 480 WP_001171854.1 pantetheine-phosphate adenylyltransferase -
  ABGU74_RS00670 waaA 139120..140397 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ABGU74_RS00675 rfaQ 140811..141869 (+) 1059 WP_000360408.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25286.40 Da        Isoelectric Point: 7.9748

>NTDB_id=1050859 ABGU74_RS00645 WP_001296533.1 136378..137046(+) (radC) [Escherichia coli isolate 30859_5#287]
MKNNVQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1050859 ABGU74_RS00645 WP_001296533.1 136378..137046(+) (radC) [Escherichia coli isolate 30859_5#287]
GTGAAAAACAATGTACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(10-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7N279

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496