Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   R8967_RS05905 Genome accession   NZ_AP028378
Coordinates   1123789..1124709 (-) Length   306 a.a.
NCBI ID   WP_070256444.1    Uniprot ID   -
Organism   Campylobacter lari strain BCH-10973     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1118789..1129709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8967_RS05885 (B10973_11320) cysK 1119757..1120659 (-) 903 WP_070256450.1 cysteine synthase A -
  R8967_RS05890 (B10973_11330) - 1120755..1121057 (-) 303 WP_012661929.1 HU family DNA-binding protein -
  R8967_RS05895 (B10973_11340) - 1121150..1122277 (-) 1128 WP_070256448.1 hypothetical protein -
  R8967_RS05900 (B10973_11350) - 1122286..1123788 (-) 1503 WP_070256446.1 MBOAT family protein -
  R8967_RS05905 (B10973_11360) waaF 1123789..1124709 (-) 921 WP_070256444.1 lipopolysaccharide heptosyltransferase II Regulator
  R8967_RS05910 (B10973_11370) - 1124758..1125570 (+) 813 WP_220516498.1 glycosyltransferase family 2 protein -
  R8967_RS05915 - 1125575..1127499 (-) 1925 Protein_1147 motility associated factor glycosyltransferase family protein -
  R8967_RS05920 (B10973_11410) - 1127500..1128264 (-) 765 WP_220555188.1 oxidoreductase -
  R8967_RS05925 (B10973_11420) - 1128264..1128971 (-) 708 WP_263658940.1 acylneuraminate cytidylyltransferase family protein -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34844.02 Da        Isoelectric Point: 10.2603

>NTDB_id=105077 R8967_RS05905 WP_070256444.1 1123789..1124709(-) (waaF) [Campylobacter lari strain BCH-10973]
MRIFINLPTWLGDAVMASAAIYAIKEKFNDAEFLFYGSFVSTQVFKNFQNCKVIVENKKQRYSQIFKLRKELKEFDLAIS
FRSAFSSKLILHFIKAKQRFFFDKNQNKNDHQVLKYLKFIEQILDFKANSNSLKLPIKAKSTKKILGINAGAHYGSAKRW
EASYFARVAKEFSHTHKILIFGVESEKKICDEIENLLLNDGIKAKNLCGKTSIFTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKNLLGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=105077 R8967_RS05905 WP_070256444.1 1123789..1124709(-) (waaF) [Campylobacter lari strain BCH-10973]
ATGAGAATTTTTATAAATTTGCCTACTTGGCTTGGTGATGCGGTGATGGCAAGTGCTGCGATATATGCTATAAAAGAAAA
ATTTAACGATGCTGAATTTTTATTTTATGGTTCTTTTGTAAGCACGCAAGTTTTTAAAAATTTTCAAAATTGTAAAGTCA
TAGTAGAAAATAAAAAACAAAGATATTCTCAAATTTTTAAACTCAGAAAAGAACTTAAAGAATTTGATCTAGCCATTAGT
TTTCGCTCAGCCTTTTCTAGTAAGTTGATTTTGCATTTTATCAAGGCAAAGCAAAGATTTTTTTTTGATAAAAATCAAAA
TAAAAACGATCATCAAGTTTTAAAATATTTAAAATTTATAGAGCAAATTTTAGATTTTAAAGCCAATTCAAATTCATTAA
AACTTCCTATAAAAGCAAAATCAACTAAAAAAATTCTAGGCATAAATGCTGGGGCTCATTATGGAAGTGCAAAAAGATGG
GAGGCAAGCTATTTTGCAAGGGTTGCAAAAGAATTTAGCCATACCCATAAAATTTTAATTTTTGGCGTAGAAAGTGAAAA
AAAAATTTGCGATGAAATAGAAAATTTATTATTAAATGATGGTATAAAAGCTAAGAATTTATGTGGAAAAACTAGTATTT
TTACTCTTTGTAAAAATATATCTATGCTTGATTTACTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGGGTAAAAACAGTGGCTGTTTTTGGCTCGACTAAATTTAGTCAAACCTCGCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGATTTAAAGCCTG
AAGTGGTAATAAATCTAGCAAAAAATCTTTTAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(66-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.287

100

0.67

Multiple sequence alignment