Detailed information NTG0105068

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: R8967_RS01955
• Genome accession: NZ_AP028378
• Coordinates: 361457..362848 (+)
• Length: 463 a.a.
• NCBI ID: WP_070256004.1
• Uniprot ID: -
• Organism: Campylobacter lari strain BCH-10973
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 356457..367848

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8967_RS01940 (B10973_03810)	-	356842..357486 (+)	645	WP_012661128.1	HAD family hydrolase	-
R8967_RS01945 (B10973_03820)	nifJ	357604..361158 (+)	3555	WP_070255998.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
R8967_RS01950 (B10973_03830)	-	361225..361485 (+)	261	WP_148120128.1	hypothetical protein	-
R8967_RS01955 (B10973_03840)	ctsD	361457..362848 (+)	1392	WP_070256004.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
R8967_RS01960 (B10973_03850)	-	362829..363158 (+)	330	WP_012661132.1	hypothetical protein	-
R8967_RS01965 (B10973_03860)	-	363151..364665 (+)	1515	WP_263689042.1	GspE/PulE family protein	-
R8967_RS01970 (B10973_03870)	-	364662..365822 (+)	1161	WP_317728187.1	type II secretion system F family protein	-
R8967_RS01975 (B10973_03880)	-	365819..366571 (-)	753	WP_012661135.1	TSUP family transporter	-
R8967_RS01980 (B10973_03890)	-	366556..367305 (-)	750	WP_012661136.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52525.34 Da
• Isoelectric Point: 7.9605

>NTDB_id=105068 R8967_RS01955 WP_070256004.1 361457..362848(+) (ctsD) [Campylobacter lari strain BCH-10973]
MKKIIFLFISILSFTNIFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSAKEADNLVISTDKFDFWEKIS
EEIQALLDENATKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQDLAFKLNG
DDNDFIINKGGVKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide

• Length: 1392 bp

>NTDB_id=105068 R8967_RS01955 WP_070256004.1 361457..362848(+) (ctsD) [Campylobacter lari strain BCH-10973]
ATGAAAAAAATAATATTTTTATTCATTAGTATTTTAAGTTTTACAAATATTTTTGCTTCGCAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAGACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGATTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTTCATTATATAAGCTCTATTAGAGAAGGGCAAAGCATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AGGGTGATTATGATAGTGCTAAAGAAGCAGATAATTTAGTCATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATGCAACTAAACCTATTATTAATACTAATGCGGGAATTATTACTTTAAATGC
TACCTTGTATGAACTTACAAGAGTTGAAAAATATCTAAAAGACTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGCCATTCAAGTGGGATTAACTGGCAAGATCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGTGGTGTTAAAAATATTAATCTTAAAGCTAATGTTGAAACTAAGGCTATTTT
AAATTTATTGCAAGAAAATGGTAAAACCACTGTACTTTCTAACCCAAAACTCATGGCACTTAATAATCAGCAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCAGAAATTTCAGATGATCATAAAATCATGCTTAG
GATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAACCAAGAAATATAGCACCAGATA
CTATACAAAAAAAGCTTTCTACTGTAGTTGAAGTGGATGATGGGCAAACTTTAATTTTGGGTGGATTGATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTAAGTGCTTTATCTAAAATACCACTTTTTGGTGCCTTGTTTCAAGGAAAGCAAAATTT
AGAAGATATTAGTGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGTTTGAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	57.265	100	0.579