Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   R8967_RS01595 Genome accession   NZ_AP028378
Coordinates   288167..289345 (+) Length   392 a.a.
NCBI ID   WP_264271991.1    Uniprot ID   -
Organism   Campylobacter lari strain BCH-10973     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 283167..294345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8967_RS01580 (B10973_03110) - 283375..284463 (+) 1089 WP_317728175.1 hypothetical protein -
  R8967_RS01585 (B10973_03120) - 284472..286112 (+) 1641 WP_317728177.1 glycosyltransferase family 2 protein -
  R8967_RS01590 (B10973_03130) - 286143..288170 (+) 2028 WP_264271989.1 capsular polysaccharide biosynthesis protein -
  R8967_RS01595 (B10973_03140) kpsS 288167..289345 (+) 1179 WP_264271991.1 capsule biosynthesis protein Regulator
  R8967_RS01600 (B10973_03150) - 289342..290850 (-) 1509 WP_264271992.1 SGNH/GDSL hydrolase family protein -
  R8967_RS01605 (B10973_03160) - 291014..292144 (+) 1131 WP_264271994.1 DUF829 domain-containing protein -
  R8967_RS01610 (B10973_03170) - 292153..293520 (+) 1368 WP_264271996.1 cytochrome P450 -
  R8967_RS01615 (B10973_03180) - 293523..293876 (+) 354 WP_039627957.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46396.93 Da        Isoelectric Point: 10.1073

>NTDB_id=105067 R8967_RS01595 WP_264271991.1 288167..289345(+) (kpsS) [Campylobacter lari strain BCH-10973]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIAIKIPKANVYKVNFNGGDFLFYPFNSINYTKSLVELESFYKKLFEEKQIQV
ILMYNDCRKIHEIAINVAKQMDIEVWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKFDKDFKFKTFSSTFKNM
AFASFLYWFFAFLLSWYFNNSLHHRSLKLFDFLPWFCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKTTEKFIEEVIISFANHAKAKSYLVFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYVHDLHLPTLLINARGTIVINST
VGLSALYHNSPLKVIGKAFYDIEGLTYQKSLHTFWKECRAYKPDAVLHAKFRNYVIYKTQVNGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=105067 R8967_RS01595 WP_264271991.1 288167..289345(+) (kpsS) [Campylobacter lari strain BCH-10973]
ATGAATTTAAGTAAGAAGTTAAAAAAATTTTCCGGTAAAAATGTTTTGTTACTCCAAGGGCCTGTGGGAGGATTTTTTCG
CAAAATTGCTATAAAAATTCCAAAAGCTAATGTTTATAAAGTAAATTTTAATGGAGGAGATTTTTTATTTTATCCTTTTA
ATAGTATCAATTATACCAAAAGCTTAGTTGAGCTTGAAAGTTTTTATAAAAAGCTTTTTGAAGAAAAGCAAATTCAAGTT
ATTTTGATGTATAATGATTGTAGAAAAATTCATGAGATAGCCATTAATGTAGCTAAGCAAATGGATATTGAAGTGTGGAT
TTTTGAAGAAGGGTATATAAGACCAAATTTCATTACTTTTGAAAAAGATGGAGTGAATGCAAACTCTACTTTGCCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGATAAAGATTTTAAATTTAAAACTTTTTCAAGTACTTTTAAAAATATG
GCTTTTGCTTCATTTTTATACTGGTTTTTTGCTTTTTTACTTTCTTGGTATTTTAATAATTCTTTACATCATAGAAGTTT
AAAATTATTTGATTTTTTACCTTGGTTTTGTTCGGTATATAGAAAAAACAAATACAAAATCACAGAAAAAAGTTTAAACG
AGAAAATTCTTTCTTTAAAACAAAAGTATTTTTTAGCTATTTTGCAAGTGCATAATGATACTCAATTGTCTCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAAGTGATTATCTCTTTTGCTAATCATGCCAAAGCAAAGTCTTATCTAGTTTT
TAAGCATCATCCTATGGACCGTGGTTATAGAGACTATACTAAGCTTATAGAAGATTTGAGTTTAAAATATAATGTTGAGG
GTAGAATTTTATATGTACATGACTTGCATTTGCCTACACTTTTGATCAATGCAAGAGGCACCATAGTGATAAATAGCACA
GTAGGACTTTCTGCTTTATATCATAATAGTCCTTTAAAGGTTATAGGAAAAGCCTTTTATGATATAGAAGGTTTGACTTA
TCAAAAAAGCTTGCATACTTTTTGGAAAGAATGTAGAGCATATAAGCCTGATGCAGTTTTGCACGCTAAATTTAGAAATT
ATGTGATATATAAAACCCAAGTCAATGGAAATTTCTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.278

100

0.628

Multiple sequence alignment