Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ABGU86_RS18325 Genome accession   NZ_OZ040669
Coordinates   3687186..3687791 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate 30821_1#117     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3682186..3692791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU86_RS18305 aes 3682327..3683286 (+) 960 WP_000801794.1 acetyl esterase -
  ABGU86_RS18310 hemH 3683283..3684245 (-) 963 WP_001250114.1 ferrochelatase -
  ABGU86_RS18315 adk 3684377..3685021 (-) 645 WP_001220233.1 adenylate kinase -
  ABGU86_RS18320 htpG 3685202..3687076 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  ABGU86_RS18325 recR 3687186..3687791 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ABGU86_RS18330 ybaB 3687791..3688120 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ABGU86_RS18335 dnaX 3688173..3690104 (-) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  ABGU86_RS18340 apt 3690233..3690784 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ABGU86_RS18345 ybaN 3690937..3691314 (-) 378 WP_001188900.1 DUF454 family protein -
  ABGU86_RS18350 priC 3691384..3691911 (+) 528 WP_000844862.1 primosomal replication protein N'' -
  ABGU86_RS18355 rsmS 3691925..3692089 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1050653 ABGU86_RS18325 WP_001195025.1 3687186..3687791(-) (recR) [Escherichia coli isolate 30821_1#117]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1050653 ABGU86_RS18325 WP_001195025.1 3687186..3687791(-) (recR) [Escherichia coli isolate 30821_1#117]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443