Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU86_RS00665 Genome accession   NZ_OZ040669
Coordinates   123409..124077 (+) Length   222 a.a.
NCBI ID   WP_001296533.1    Uniprot ID   B7N279
Organism   Escherichia coli isolate 30821_1#117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 118409..129077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU86_RS00635 yicC 118428..119291 (-) 864 WP_000621332.1 YicC/YloC family endoribonuclease -
  ABGU86_RS00640 rph 119418..120134 (+) 717 WP_001247093.1 ribonuclease PH -
  ABGU86_RS00645 pyrE 120200..120841 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  ABGU86_RS00650 slmA 120878..121474 (-) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  ABGU86_RS00655 dut 121581..122039 (-) 459 WP_000976070.1 dUTP diphosphatase -
  ABGU86_RS00660 coaBC 122017..123237 (-) 1221 WP_000050112.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ABGU86_RS00665 radC 123409..124077 (+) 669 WP_001296533.1 DNA repair protein RadC Machinery gene
  ABGU86_RS00670 rpmB 124294..124530 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  ABGU86_RS00675 rpmG 124551..124718 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  ABGU86_RS00680 mutM 124816..125625 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ABGU86_RS00685 coaD 125664..126143 (-) 480 WP_001171854.1 pantetheine-phosphate adenylyltransferase -
  ABGU86_RS00690 waaA 126151..127428 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ABGU86_RS00695 rfaQ 127842..128900 (+) 1059 WP_000360408.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25286.40 Da        Isoelectric Point: 7.9748

>NTDB_id=1050600 ABGU86_RS00665 WP_001296533.1 123409..124077(+) (radC) [Escherichia coli isolate 30821_1#117]
MKNNVQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1050600 ABGU86_RS00665 WP_001296533.1 123409..124077(+) (radC) [Escherichia coli isolate 30821_1#117]
GTGAAAAACAATGTACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(10-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7N279

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496