Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU88_RS15525 Genome accession   NZ_OZ040555
Coordinates   3130769..3131398 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   B7UN38
Organism   Escherichia coli isolate 30859_5#11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3125769..3136398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU88_RS15510 helD 3126011..3128065 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU88_RS15515 yccF 3128188..3128634 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU88_RS15520 yccS 3128644..3130806 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU88_RS15525 sxy/tfoX 3130769..3131398 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU88_RS15530 sulA 3131617..3132126 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU88_RS15535 ompA 3132482..3133534 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU88_RS15540 matP 3133610..3134062 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU88_RS15545 ycbZ 3134248..3136008 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1050558 ABGU88_RS15525 WP_000839151.1 3130769..3131398(-) (sxy/tfoX) [Escherichia coli isolate 30859_5#11]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1050558 ABGU88_RS15525 WP_000839151.1 3130769..3131398(-) (sxy/tfoX) [Escherichia coli isolate 30859_5#11]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UN38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995