Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ABGU61_RS18570 Genome accession   NZ_OZ040539
Coordinates   3743501..3744106 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate 30345_1#31     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3738501..3749106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU61_RS18550 aes 3738642..3739601 (+) 960 WP_000801794.1 acetyl esterase -
  ABGU61_RS18555 hemH 3739598..3740560 (-) 963 WP_001250114.1 ferrochelatase -
  ABGU61_RS18560 adk 3740692..3741336 (-) 645 WP_001220233.1 adenylate kinase -
  ABGU61_RS18565 htpG 3741517..3743391 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  ABGU61_RS18570 recR 3743501..3744106 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ABGU61_RS18575 ybaB 3744106..3744435 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ABGU61_RS18580 dnaX 3744488..3746419 (-) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  ABGU61_RS18585 apt 3746548..3747099 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ABGU61_RS18590 ybaN 3747252..3747629 (-) 378 WP_001188900.1 DUF454 family protein -
  ABGU61_RS18595 priC 3747699..3748226 (+) 528 WP_000844862.1 primosomal replication protein N'' -
  ABGU61_RS18600 rsmS 3748240..3748404 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1050477 ABGU61_RS18570 WP_001195025.1 3743501..3744106(-) (recR) [Escherichia coli isolate 30345_1#31]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1050477 ABGU61_RS18570 WP_001195025.1 3743501..3744106(-) (recR) [Escherichia coli isolate 30345_1#31]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443