Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   ACEY2B_RS00680 Genome accession   NZ_CP169315
Coordinates   130355..131383 (+) Length   342 a.a.
NCBI ID   WP_015427190.1    Uniprot ID   -
Organism   Lactococcus lactis strain IFLLLBEK1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 125355..136383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEY2B_RS00660 (ACEY2B_00660) lmrP 126585..127811 (+) 1227 WP_015427193.1 multidrug efflux MFS transporter LmrP -
  ACEY2B_RS00665 (ACEY2B_00665) - 127893..129113 (+) 1221 WP_015427192.1 MFS transporter -
  ACEY2B_RS00670 (ACEY2B_00670) rsmD 129284..129823 (+) 540 WP_015427191.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACEY2B_RS00675 (ACEY2B_00675) coaD 129871..130368 (+) 498 WP_010906348.1 pantetheine-phosphate adenylyltransferase -
  ACEY2B_RS00680 (ACEY2B_00680) sepM 130355..131383 (+) 1029 WP_015427190.1 SepM family pheromone-processing serine protease Regulator
  ACEY2B_RS00685 (ACEY2B_00685) - 131504..132361 (+) 858 WP_015427189.1 transcription regulator -
  ACEY2B_RS00690 (ACEY2B_00690) - 132545..133390 (+) 846 WP_278217401.1 radical SAM protein -
  ACEY2B_RS00695 (ACEY2B_00695) - 133387..134586 (+) 1200 WP_225513542.1 MFS transporter -
  ACEY2B_RS00700 (ACEY2B_00700) - 134579..135406 (+) 828 WP_015427187.1 radical SAM protein -
  ACEY2B_RS00705 (ACEY2B_00705) - 135403..135612 (+) 210 WP_003132661.1 hypothetical protein -
  ACEY2B_RS00710 (ACEY2B_00710) - 135599..136078 (+) 480 WP_015427186.1 nitroreductase family protein -

Sequence


Protein


Download         Length: 342 a.a.        Molecular weight: 37410.10 Da        Isoelectric Point: 10.0143

>NTDB_id=1050452 ACEY2B_RS00680 WP_015427190.1 130355..131383(+) (sepM) [Lactococcus lactis strain IFLLLBEK1]
MKKNKKINPKLKWGISIGLIVVALLALFYPTSYYVEMPGTTEPLGKMVKVEGKKDEHKGDFFLTTVQIARANLATMIYSH
FNSFTSIYSEQEMTGGLNDAQFNRVNQFYMETAQNTAIYQAFKLANKPYELKYEGVYVLDIAKNSTFKNKLELADTITAV
NGQQFTSSADMIAYVSKQKVGDTVKIEYTRIDGTKRKSTGKYIKIANGKTGIGISLVDHTEVVTTPKVTVNAGSIGGPSA
GMMFTLEIYSQLTGKDLRNGREIAGTGTIEHDGSIGQIGGVDKKVATASKEGAKVFLVPDSGTKKESSNNYLGAKAAAKK
LKTKMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=1050452 ACEY2B_RS00680 WP_015427190.1 130355..131383(+) (sepM) [Lactococcus lactis strain IFLLLBEK1]
ATGAAAAAAAATAAAAAAATTAATCCCAAATTAAAATGGGGAATCTCGATTGGTCTAATTGTTGTTGCCCTTTTAGCTTT
ATTTTATCCAACAAGTTACTATGTGGAAATGCCCGGAACAACCGAGCCTTTAGGAAAAATGGTCAAAGTTGAAGGCAAAA
AAGATGAACATAAAGGTGATTTTTTCCTGACGACTGTCCAAATTGCACGAGCAAATCTTGCTACAATGATTTACAGCCAT
TTTAATAGTTTTACAAGCATTTACAGTGAGCAAGAAATGACTGGTGGACTTAACGACGCACAGTTCAACCGTGTCAACCA
GTTTTACATGGAAACGGCACAGAATACAGCGATTTATCAAGCTTTTAAATTAGCTAATAAACCTTATGAACTTAAATATG
AAGGCGTTTATGTCCTTGATATTGCCAAAAATTCGACCTTTAAAAATAAGCTAGAACTTGCAGATACGATTACAGCAGTC
AATGGTCAACAGTTTACATCAAGTGCCGACATGATTGCTTATGTTTCCAAACAAAAAGTCGGTGATACAGTAAAGATTGA
ATACACGAGAATTGACGGCACAAAGCGCAAGTCAACTGGCAAATACATCAAAATTGCTAATGGAAAAACAGGAATTGGGA
TCAGCCTAGTTGACCATACTGAAGTCGTGACGACTCCAAAAGTTACTGTCAACGCGGGTTCAATCGGTGGTCCCTCTGCG
GGGATGATGTTTACACTAGAAATTTACAGTCAGTTGACAGGAAAAGATTTGCGAAACGGTCGCGAAATTGCTGGAACTGG
GACGATTGAACATGACGGAAGCATTGGCCAAATCGGCGGTGTTGATAAAAAAGTAGCCACAGCGAGCAAAGAAGGGGCAA
AGGTCTTCTTAGTGCCTGACTCAGGCACCAAAAAGGAAAGTAGCAACAATTACCTTGGAGCCAAAGCCGCAGCTAAAAAA
CTAAAAACGAAGATGAAAATCGTTCCCGTCAAAACTATTCAGGACGCTTTAGATTATTTAGAAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.696

100

0.491


Multiple sequence alignment