Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8946_RS07435 Genome accession   NZ_AP028374
Coordinates   1445496..1445807 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain BCH-10881     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1440496..1450807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8946_RS07415 (B10881_14680) ctsE 1441365..1442924 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  R8946_RS07420 (B10881_14690) ctsX 1442914..1443501 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8946_RS07425 (B10881_14700) ctsP 1443505..1444113 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8946_RS07430 (B10881_14710) ctsD 1444106..1445518 (-) 1413 WP_100626162.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8946_RS07435 (B10881_14720) ctsR 1445496..1445807 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  R8946_RS07440 (B10881_14730) nifJ 1445831..1449391 (-) 3561 WP_052790037.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8946_RS07445 (B10881_14740) - 1449484..1450125 (-) 642 WP_002855494.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=105035 R8946_RS07435 WP_002855438.1 1445496..1445807(-) (ctsR) [Campylobacter jejuni strain BCH-10881]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=105035 R8946_RS07435 WP_002855438.1 1445496..1445807(-) (ctsR) [Campylobacter jejuni strain BCH-10881]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment