Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACEYW7_RS01855 Genome accession   NZ_CP169298
Coordinates   387330..388148 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AMA205     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 382330..393148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEYW7_RS01820 (ACEYW7_01820) - 382912..383042 (-) 131 Protein_350 hypothetical protein -
  ACEYW7_RS01825 (ACEYW7_01825) rpoZ 383081..383359 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACEYW7_RS01830 (ACEYW7_01830) gmk 383432..384061 (-) 630 WP_000015937.1 guanylate kinase -
  ACEYW7_RS01835 (ACEYW7_01835) ispH 384184..385134 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACEYW7_RS01840 (ACEYW7_01840) fimU 385304..385777 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACEYW7_RS01845 (ACEYW7_01845) pilV 385771..386331 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACEYW7_RS01850 (ACEYW7_01850) pilW 386332..387333 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  ACEYW7_RS01855 (ACEYW7_01855) pilX 387330..388148 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACEYW7_RS01860 (ACEYW7_01860) pilY1 388160..392014 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  ACEYW7_RS01865 (ACEYW7_01865) pilY2 392027..392509 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  ACEYW7_RS01870 (ACEYW7_01870) pilE 392506..392931 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1050310 ACEYW7_RS01855 WP_000149374.1 387330..388148(+) (pilX) [Acinetobacter baumannii strain AMA205]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1050310 ACEYW7_RS01855 WP_000149374.1 387330..388148(+) (pilX) [Acinetobacter baumannii strain AMA205]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment