Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU67_RS09000 Genome accession   NZ_OZ040465
Coordinates   1900711..1901187 (-) Length   158 a.a.
NCBI ID   WP_001186200.1    Uniprot ID   -
Organism   Escherichia coli isolate 30859_5#29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1895711..1906187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU67_RS08950 yeeA 1896269..1897327 (+) 1059 WP_001200889.1 FUSC family protein -
  ABGU67_RS08955 tmaR 1897499..1897828 (+) 330 WP_000450409.1 DUF496 family protein -
  ABGU67_RS08960 - 1897929..1898111 (-) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  ABGU67_RS08965 - 1898231..1898311 (+) 81 WP_023441679.1 hypothetical protein -
  ABGU67_RS08970 - 1898600..1898680 (-) 81 Protein_1756 hypothetical protein -
  ABGU67_RS08975 yeeW 1898726..1898920 (-) 195 WP_000988600.1 DUF5983 family protein -
  ABGU67_RS08980 cbtA 1898917..1899291 (-) 375 WP_000854815.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ABGU67_RS08985 cbeA 1899380..1899748 (-) 369 WP_001280918.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ABGU67_RS08990 - 1899764..1900408 (-) 645 WP_000086752.1 hypothetical protein -
  ABGU67_RS08995 yeeT 1900427..1900648 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  ABGU67_RS09000 radC 1900711..1901187 (-) 477 WP_001186200.1 RadC family protein Machinery gene
  ABGU67_RS09005 - 1901203..1901676 (-) 474 WP_001542276.1 antirestriction protein -
  ABGU67_RS09010 - 1901770..1902015 (-) 246 WP_001164966.1 hypothetical protein -
  ABGU67_RS09015 - 1902015..1902833 (-) 819 WP_001542275.1 DUF932 domain-containing protein -
  ABGU67_RS09020 - 1903054..1903464 (-) 411 WP_000846703.1 hypothetical protein -
  ABGU67_RS09025 - 1903480..1903830 (-) 351 Protein_1767 hypothetical protein -
  ABGU67_RS09030 istB 1903913..1904659 (-) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17764.39 Da        Isoelectric Point: 7.6152

>NTDB_id=1050286 ABGU67_RS09000 WP_001186200.1 1900711..1901187(-) (radC) [Escherichia coli isolate 30859_5#29]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1050286 ABGU67_RS09000 WP_001186200.1 1900711..1901187(-) (radC) [Escherichia coli isolate 30859_5#29]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392