Detailed information NTG0105023

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: R8946_RS05610
• Genome accession: NZ_AP028374
• Coordinates: 1087103..1088053 (+)
• Length: 316 a.a.
• NCBI ID: WP_041160151.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain BCH-10881
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1082103..1093053

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8946_RS05595 (B10881_10980)	-	1082950..1084881 (-)	1932	WP_052785346.1	hypothetical protein	-
R8946_RS05600 (B10881_10990)	-	1084957..1086231 (+)	1275	WP_041160150.1	DUF2972 domain-containing protein	-
R8946_RS05605 (B10881_11010)	-	1086195..1087044 (-)	850	Protein_1084	glycosyltransferase family 2 protein	-
R8946_RS05610 (B10881_11020)	waaF	1087103..1088053 (+)	951	WP_041160151.1	lipopolysaccharide heptosyltransferase II	Regulator
R8946_RS05615 (B10881_11030)	-	1088039..1088803 (-)	765	WP_002899462.1	glycosyltransferase family 25 protein	-
R8946_RS05620 (B10881_11040)	gmhA	1088803..1089363 (-)	561	WP_041160152.1	D-sedoheptulose 7-phosphate isomerase	-
R8946_RS05625 (B10881_11050)	rfaE1	1089360..1090745 (-)	1386	WP_317726831.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
R8946_RS05630 (B10881_11060)	rfaD	1090738..1091691 (-)	954	WP_052802041.1	ADP-glyceromanno-heptose 6-epimerase	-
R8946_RS05635 (B10881_11070)	gmhB	1091692..1092252 (-)	561	WP_317726833.1	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
R8946_RS05640 (B10881_11080)	-	1092333..1092635 (+)	303	WP_002852762.1	c-type cytochrome	-
R8946_RS05645 (B10881_11090)	ccoS	1092658..1092864 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 316 a.a.
• Molecular weight: 36292.91 Da
• Isoelectric Point: 10.2419

>NTDB_id=105023 R8946_RS05610 WP_041160151.1 1087103..1088053(+) (waaF) [Campylobacter jejuni strain BCH-10881]
MKIFIHLPTWLGDAVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLGIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKIKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI

Nucleotide

• Length: 951 bp

>NTDB_id=105023 R8946_RS05610 WP_041160151.1 1087103..1088053(+) (waaF) [Campylobacter jejuni strain BCH-10881]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGTTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGGCATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCATATAAGTGCGGTCTATAAGATAAAAACCGTGGCTATTTTTGGTCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAACGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	95.541	99.367	0.949