Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACETQG_RS07235 Genome accession   NZ_CP169283
Coordinates   1545021..1546835 (-) Length   604 a.a.
NCBI ID   WP_145558297.1    Uniprot ID   -
Organism   Weissella cibaria strain ZJU.1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540021..1551835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETQG_RS07210 (ACETQG_07210) - 1540518..1541618 (-) 1101 WP_374915344.1 M24 family metallopeptidase -
  ACETQG_RS07215 (ACETQG_07215) ccpA 1541870..1542871 (+) 1002 WP_010373031.1 catabolite control protein A -
  ACETQG_RS07220 (ACETQG_07220) - 1542930..1543502 (-) 573 WP_134659361.1 hypothetical protein -
  ACETQG_RS07225 (ACETQG_07225) - 1543518..1543907 (-) 390 WP_010372520.1 DUF948 domain-containing protein -
  ACETQG_RS07230 (ACETQG_07230) - 1544215..1544934 (+) 720 WP_043709532.1 MIP/aquaporin family protein -
  ACETQG_RS07235 (ACETQG_07235) pepF 1545021..1546835 (-) 1815 WP_145558297.1 oligoendopeptidase F Regulator
  ACETQG_RS07240 (ACETQG_07240) - 1546875..1547909 (-) 1035 WP_134659365.1 competence protein CoiA -
  ACETQG_RS07245 (ACETQG_07245) - 1548011..1549375 (-) 1365 WP_063082908.1 PTS sugar transporter subunit IIC -
  ACETQG_RS07250 (ACETQG_07250) - 1549442..1550893 (-) 1452 WP_010372504.1 6-phospho-beta-glucosidase -
  ACETQG_RS07255 (ACETQG_07255) - 1550899..1551222 (-) 324 WP_010372502.1 PTS lactose/cellobiose transporter subunit IIA -
  ACETQG_RS07260 (ACETQG_07260) - 1551268..1551585 (-) 318 WP_010372498.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67724.51 Da        Isoelectric Point: 4.2744

>NTDB_id=1050197 ACETQG_RS07235 WP_145558297.1 1545021..1546835(-) (pepF) [Weissella cibaria strain ZJU.1]
MAKELPLRDALPESMTWNLQTIFASDEAWEDAFDELADRLESADFFAQSATTSGTDLYNALQYGLGVMRDLEKLYVYASM
KSDQDTANAYYQGLSNRAEALAARVSAAIAFFDPAVLSLSEAELTAFFESEPKLGAYKHYFESILTQQGHVLTPDQEALL
AAAGDVFGASERTFGVLDNADIKFEAVANEDGELETLSNGVYSRLLESTDPEVRRNAFQTFYKSYVSLENTFASLIASHV
KGHNFMAAVHNYDNAREAALAGNHVPEVVYDTLVAEVNEALPLLHRYVALRKQLLGLDELHSYDLYTPILGEPDFTIDYE
SAQAEALKALAPLGEDYLEVVNTAFDNRWIDVIENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLSTLVHEMGHSVHSYL
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLKTVTDKKLRAYILNQYLDGVKGTVFRQTQFAEFEQWMHVTDAQGVPL
TADVLDEAYGELNRRYYGPALTFDDEIAHEWERIPHFYYNFYVFQYSTGFAAATAMADKILTEGAPAVAAYKEYLKAGSS
AFPIDVMKKAGLDMTKPDYLRDTFKVFEERLNEFEALVAELAAE

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1050197 ACETQG_RS07235 WP_145558297.1 1545021..1546835(-) (pepF) [Weissella cibaria strain ZJU.1]
ATGGCCAAAGAATTACCATTACGAGATGCATTGCCCGAGTCAATGACTTGGAATTTGCAGACGATTTTTGCTTCTGATGA
AGCGTGGGAAGATGCCTTTGATGAATTGGCCGATCGGTTAGAGTCAGCGGATTTCTTCGCCCAATCAGCAACGACGTCTG
GTACAGATTTGTACAATGCGTTGCAATACGGTTTGGGTGTGATGCGTGACTTAGAAAAGCTGTATGTCTATGCTTCAATG
AAATCAGACCAAGATACAGCCAACGCTTATTATCAAGGGTTGAGCAATCGAGCTGAAGCCTTGGCAGCACGTGTTTCGGC
GGCCATTGCATTCTTTGATCCAGCTGTTTTGTCACTTTCAGAAGCTGAATTAACGGCCTTTTTTGAATCAGAACCTAAGC
TGGGGGCGTACAAGCATTACTTCGAGAGCATCTTGACGCAACAAGGTCACGTCTTAACGCCAGACCAAGAAGCATTGTTA
GCTGCTGCTGGGGATGTTTTTGGTGCGTCAGAACGGACATTTGGTGTGTTGGATAATGCCGATATTAAGTTTGAAGCTGT
TGCCAACGAAGATGGTGAACTGGAGACGTTGTCAAACGGTGTCTATTCACGTTTATTGGAGTCGACTGACCCGGAAGTAC
GTCGAAATGCTTTCCAAACGTTCTACAAGTCATATGTCTCACTTGAAAATACCTTTGCATCTTTGATTGCCAGTCACGTG
AAGGGCCATAACTTTATGGCGGCGGTTCACAACTATGATAATGCGCGTGAAGCTGCTTTAGCTGGTAACCATGTGCCAGA
AGTGGTGTACGATACATTGGTGGCGGAAGTAAATGAAGCGTTGCCGTTGTTGCATCGTTACGTTGCCCTCCGAAAGCAAT
TGTTGGGCTTGGACGAATTGCACTCATACGATTTGTATACCCCAATTTTGGGCGAACCTGACTTTACGATTGATTACGAA
TCTGCCCAGGCTGAAGCATTAAAGGCGTTGGCACCATTGGGCGAAGATTATCTGGAAGTTGTCAATACAGCCTTTGATAA
TCGTTGGATTGATGTCATTGAGAATAAGGGCAAGCGTTCAGGAGCCTACTCGGGCGGTTCATATGATACAAATCCATTCA
TTTTGCTGAACTGGGTTGATAACCTGAACAATTTGAGCACTTTAGTTCACGAAATGGGCCACTCAGTACACTCATATTTG
ACTCGTCAAAATCAGCCTTACCACTACGGCGATTACCCAATCTTCTTGGCTGAAATTGCGTCAACGACGAACGAAAACTT
GTTGACGGATTACTTGCTTAAGACGGTGACGGATAAGAAGTTGCGTGCATATATCTTGAATCAGTACTTGGATGGTGTGA
AGGGAACGGTCTTCCGTCAAACCCAATTTGCAGAATTTGAGCAATGGATGCACGTGACGGATGCGCAAGGCGTGCCATTG
ACTGCTGATGTTTTGGATGAGGCCTATGGTGAGCTTAACCGACGTTACTACGGCCCAGCCTTGACGTTTGATGATGAAAT
TGCGCACGAGTGGGAGCGTATTCCACACTTCTACTACAACTTCTACGTGTTCCAATACAGTACTGGTTTTGCTGCTGCGA
CGGCAATGGCGGATAAGATTTTGACTGAAGGGGCACCGGCTGTGGCGGCTTATAAGGAATACTTGAAGGCTGGATCATCT
GCATTCCCAATCGATGTGATGAAGAAGGCTGGGCTTGATATGACTAAGCCGGATTACTTGCGTGACACATTCAAAGTGTT
CGAAGAGCGCTTGAACGAATTTGAAGCGTTGGTGGCAGAATTAGCTGCTGAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-184)

Peptidase family M3 (Peptidase_M3)

(205-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.299

97.848

0.522

Multiple sequence alignment