Detailed information NTG1050185

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABGU73_RS05535
• Genome accession: NZ_OZ040331
• Coordinates: 1152284..1153276 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate 30224_1#305
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1147284..1158276

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABGU73_RS05505	ispD	1147345..1148055 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABGU73_RS05510	ispF	1148055..1148534 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABGU73_RS05515	truD	1148531..1149580 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ABGU73_RS05520	surE	1149561..1150322 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABGU73_RS05525	pcm	1150316..1150942 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABGU73_RS05530	nlpD	1151127..1152221 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ABGU73_RS05535	rpoS	1152284..1153276 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABGU73_RS05540	-	1153447..1153998 (-)	552	WP_001179444.1	flavodoxin family protein	-
ABGU73_RS05545	-	1154223..1155266 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ABGU73_RS05550	ygbN	1155409..1156773 (-)	1365	WP_000104433.1	GntP family transporter	-
ABGU73_RS05555	ygbM	1156862..1157638 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1050185 ABGU73_RS05535 WP_000081550.1 1152284..1153276(+) (rpoS) [Escherichia coli isolate 30224_1#305]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1050185 ABGU73_RS05535 WP_000081550.1 1152284..1153276(+) (rpoS) [Escherichia coli isolate 30224_1#305]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715