Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   AKG93_RS17090 Genome accession   NZ_CP169262
Coordinates   197115..198296 (+) Length   393 a.a.
NCBI ID   WP_053052219.1    Uniprot ID   -
Organism   Vibrio harveyi strain VH2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 192115..203296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKG93_RS17080 (AKG93_017080) - 194329..195315 (+) 987 WP_053052220.1 peptidoglycan DD-metalloendopeptidase family protein -
  AKG93_RS17085 (AKG93_017085) ylqF 195637..196581 (+) 945 WP_005447133.1 ribosome biogenesis GTPase YlqF -
  AKG93_RS17090 (AKG93_017090) cqsA 197115..198296 (+) 1182 WP_053052219.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AKG93_RS17095 (AKG93_017095) - 198430..200475 (-) 2046 WP_017819191.1 hybrid sensor histidine kinase/response regulator -
  AKG93_RS17100 (AKG93_017100) - 200762..201379 (+) 618 WP_053052218.1 HAD family hydrolase -
  AKG93_RS17105 (AKG93_017105) - 201454..202002 (-) 549 WP_005447141.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43704.83 Da        Isoelectric Point: 6.4464

>NTDB_id=1050057 AKG93_RS17090 WP_053052219.1 197115..198296(+) (cqsA) [Vibrio harveyi strain VH2]
MSDKLKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQPGAVVMQSNDYLSLSHNQLIQKAHRDAITEHDDNVVMS
AIFLQDDTSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGAHAHAFMHNNMN
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGAGLVKALGLTDQVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGADDKRTLLFNRAKELRTGLKQIGFNIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDVDHVLTACQEAFNHPELEFA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1050057 AKG93_RS17090 WP_053052219.1 197115..198296(+) (cqsA) [Vibrio harveyi strain VH2]
ATGAGTGATAAACTGAAAACGAAACCTCTTCCTTCTTTTGTTGAGGAACGCCTAGACTTTTATATTCAAGACTTGATCGA
ACAAAACGAGAACCAGAAGCACTTGGTTTTGGGTAAGCGACCACAACCCGGAGCGGTGGTCATGCAAAGCAACGACTACT
TATCGTTATCCCACAACCAACTGATTCAAAAGGCACATCGTGATGCAATTACCGAGCATGACGACAACGTAGTAATGTCT
GCAATCTTCCTGCAAGATGATACTTCCAAGCCTGCATTTGAAACCCAACTCGCCGATTACGTGGGAATGGGAAGCTGCTT
GCTCTCACAATCAGGATGGGCGGCAAACATCGGGTTGTTGCAAACGATTTGCCCACCAAATACGCCCGTCTATATCGACT
TTTTTGCGCATATGTCGTTATGGGAAGGTATTCGAGCAGCGGGAGCACACGCGCATGCATTTATGCACAACAATATGAAC
CACTTGCGTAAACAGATCCAACGTCATGGCTCCGGTGTGATTGTTGTCGATTCAGTTTATAGCACGATTGGTACTATCGC
CCCACTTCACGACATCTACGAAATGGCACGTGAATTTGATTGTGCATTGGTCGTCGATGAATCCCACTCACTTGGAACTC
ACGGTCCAAATGGCGCGGGTCTTGTAAAGGCGTTGGGGTTAACCGATCAAGTTGATTTCATTACGGTAAGTTTGGCTAAG
ACATTCGCATACCGTGCGGGGGCTATTCTTGGTCCTGAAAAGCTAGCCAAGACACTCCCATTTGTCGCGTATCCAGCGAT
TTTTAGCTCGACGGTATTGCCGCAAGAAGTGATTCGCTTAGAAAAAACGCTTGAGGTGATTAAGGGAGCTGACGATAAAC
GAACCTTACTGTTCAACCGAGCTAAAGAGCTAAGAACAGGATTAAAACAAATTGGCTTTAATATCCGTAGTGAATCTCAA
ATTGTCGCTTTGGAGTGCGGTAGCGAGAGAAATACGGAACGTGTACGTGACTTTCTTGAAGAACGTAATGTGTTTGGTGC
AGTATTCTGTCGCCCAGCAACAGGTAAGAACAAAAACATCATCCGATTTTCAATCAATGCAGATATGACTTCTCGCGATG
TGGACCACGTACTTACCGCTTGTCAGGAAGCATTTAACCATCCAGAACTAGAATTCGCATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.881

98.473

0.57

Multiple sequence alignment