Detailed information NTG1050044

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AKG93_RS14075
• Genome accession: NZ_CP169261
• Coordinates: 3090938..3091918 (-)
• Length: 326 a.a.
• NCBI ID: WP_419800093.1
• Uniprot ID: -
• Organism: Vibrio harveyi strain VH2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3085938..3096918

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AKG93_RS14060 (AKG93_014060)	recA	3086470..3087513 (-)	1044	WP_005436413.1	recombinase RecA	Machinery gene
AKG93_RS14065 (AKG93_014065)	pncC	3087715..3088197 (-)	483	WP_009703950.1	nicotinamide-nucleotide amidase	-
AKG93_RS14070 (AKG93_014070)	mutS	3088283..3090844 (+)	2562	WP_053053788.1	DNA mismatch repair protein MutS	-
AKG93_RS14075 (AKG93_014075)	rpoS	3090938..3091918 (-)	981	WP_419800093.1	RNA polymerase sigma factor RpoS	Regulator
AKG93_RS14080 (AKG93_014080)	-	3091999..3092922 (-)	924	WP_053053786.1	peptidoglycan DD-metalloendopeptidase family protein	-
AKG93_RS14085 (AKG93_014085)	-	3092937..3093563 (-)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AKG93_RS14090 (AKG93_014090)	surE	3093563..3094339 (-)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
AKG93_RS14095 (AKG93_014095)	truD	3094339..3095382 (-)	1044	WP_053053781.1	tRNA pseudouridine(13) synthase TruD	-
AKG93_RS14100 (AKG93_014100)	ispF	3095428..3095904 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AKG93_RS14105 (AKG93_014105)	ispD	3095919..3096629 (-)	711	WP_005452107.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AKG93_RS14110 (AKG93_014110)	ftsB	3096631..3096912 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37106.98 Da
• Isoelectric Point: 4.7675

>NTDB_id=1050044 AKG93_RS14075 WP_419800093.1 3090938..3091918(-) (rpoS) [Vibrio harveyi strain VH2]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDPE
VSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEDD

Nucleotide

• Length: 981 bp

>NTDB_id=1050044 AKG93_RS14075 WP_419800093.1 3090938..3091918(-) (rpoS) [Vibrio harveyi strain VH2]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGCGAT
GAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGGTCT
TGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCTTCC
GTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGTCTG
CCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACCAAC
AGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATTAGCT
CTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCTGAA
GTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGTGCT
GGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCGAAC
GTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAACTTG
TTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.856