Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AKG93_RS13945 Genome accession   NZ_CP169261
Coordinates   3068685..3069203 (-) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio harveyi strain VH2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3063685..3074203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKG93_RS13920 (AKG93_013920) rimM 3063737..3064285 (-) 549 WP_005446245.1 ribosome maturation factor RimM -
  AKG93_RS13925 (AKG93_013925) rpsP 3064314..3064562 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  AKG93_RS13930 (AKG93_013930) ffh 3064773..3066155 (-) 1383 WP_005446242.1 signal recognition particle protein -
  AKG93_RS13935 (AKG93_013935) - 3066369..3067163 (+) 795 WP_038897985.1 cytochrome C assembly family protein -
  AKG93_RS13940 (AKG93_013940) - 3067318..3068592 (+) 1275 WP_047512919.1 HlyC/CorC family transporter -
  AKG93_RS13945 (AKG93_013945) luxS 3068685..3069203 (-) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  AKG93_RS13950 (AKG93_013950) - 3069289..3069894 (-) 606 WP_173364781.1 hypothetical protein -
  AKG93_RS13955 (AKG93_013955) gshA 3069914..3071482 (-) 1569 WP_053052945.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=1050041 AKG93_RS13945 WP_005448429.1 3068685..3069203(-) (luxS) [Vibrio harveyi strain VH2]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1050041 AKG93_RS13945 WP_005448429.1 3068685..3069203(-) (luxS) [Vibrio harveyi strain VH2]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855

Multiple sequence alignment