Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8947_RS05440 Genome accession   NZ_AP028371
Coordinates   1084519..1084965 (-) Length   148 a.a.
NCBI ID   WP_052786221.1    Uniprot ID   A0A5T0V754
Organism   Campylobacter coli strain BCH-10879     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1079519..1089965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8947_RS05425 (B10879_10670) flgH 1080769..1081467 (+) 699 WP_002787400.1 flagellar basal body L-ring protein FlgH -
  R8947_RS05430 (B10879_10680) ispG 1081551..1082624 (-) 1074 WP_002776443.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  R8947_RS05435 (B10879_10690) - 1082684..1084522 (-) 1839 WP_072214018.1 primosomal protein N' -
  R8947_RS05440 (B10879_10700) Cj0683 1084519..1084965 (-) 447 WP_052786221.1 type II secretion system protein Machinery gene
  R8947_RS05445 (B10879_10710) - 1084962..1085207 (-) 246 WP_002776428.1 hypothetical protein -
  R8947_RS05450 (B10879_10720) - 1085197..1085427 (-) 231 WP_002776426.1 hypothetical protein -
  R8947_RS05455 (B10879_10730) uvrB 1085581..1087554 (+) 1974 WP_002789903.1 excinuclease ABC subunit UvrB -
  R8947_RS05460 (B10879_10740) - 1087589..1089013 (-) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17284.15 Da        Isoelectric Point: 8.4538

>NTDB_id=105004 R8947_RS05440 WP_052786221.1 1084519..1084965(-) (Cj0683) [Campylobacter coli strain BCH-10879]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEILNSALSLMRTQVELKQISSFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=105004 R8947_RS05440 WP_052786221.1 1084519..1084965(-) (Cj0683) [Campylobacter coli strain BCH-10879]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATACTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0V754

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.432

100

0.574

Multiple sequence alignment