Detailed information
Bioinformatically predicted
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | AKG93_RS09685 | Genome accession | NZ_CP169261 |
| Coordinates | 2159119..2160540 (+) | Length | 473 a.a. |
| NCBI ID | WP_005445536.1 | Uniprot ID | A0A9X3ML51 |
| Organism | Vibrio harveyi strain VH2 | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2142420..2170721 | 2159119..2160540 | within | 0 |
Gene organization within MGE regions
Location: 2142420..2170721
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AKG93_RS09600 (AKG93_009600) | - | 2142420..2142926 (-) | 507 | WP_080994966.1 | AAA family ATPase | - |
| AKG93_RS09605 (AKG93_009605) | - | 2143474..2143890 (-) | 417 | WP_047517001.1 | lysozyme inhibitor LprI family protein | - |
| AKG93_RS09610 (AKG93_009610) | - | 2144054..2144410 (-) | 357 | WP_050926492.1 | hypothetical protein | - |
| AKG93_RS09615 (AKG93_009615) | - | 2144464..2144985 (-) | 522 | WP_053052273.1 | hypothetical protein | - |
| AKG93_RS09620 (AKG93_009620) | - | 2145044..2146225 (-) | 1182 | WP_230689818.1 | hypothetical protein | - |
| AKG93_RS09625 (AKG93_009625) | btuD | 2146478..2147245 (-) | 768 | WP_080654225.1 | vitamin B12 ABC transporter ATP-binding protein BtuD | - |
| AKG93_RS09630 (AKG93_009630) | btuC | 2147232..2148227 (-) | 996 | WP_020197786.1 | vitamin B12 ABC transporter permease BtuC | - |
| AKG93_RS09635 (AKG93_009635) | - | 2148330..2149358 (-) | 1029 | WP_053052274.1 | succinylglutamate desuccinylase | - |
| AKG93_RS09640 (AKG93_009640) | - | 2149597..2151396 (-) | 1800 | WP_053052275.1 | M3 family oligoendopeptidase | - |
| AKG93_RS09645 (AKG93_009645) | cobC | 2151479..2152093 (-) | 615 | WP_053052276.1 | alpha-ribazole phosphatase | - |
| AKG93_RS09650 (AKG93_009650) | cobU | 2152090..2152638 (-) | 549 | WP_053052277.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| AKG93_RS09655 (AKG93_009655) | - | 2152635..2153441 (-) | 807 | WP_053052278.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| AKG93_RS09660 (AKG93_009660) | cobT | 2153441..2154484 (-) | 1044 | WP_080994967.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| AKG93_RS09665 (AKG93_009665) | - | 2154504..2155115 (-) | 612 | WP_053052280.1 | flavin reductase family protein | - |
| AKG93_RS09670 (AKG93_009670) | - | 2155792..2156487 (+) | 696 | WP_053052281.1 | NAD(P)H-binding protein | - |
| AKG93_RS09675 (AKG93_009675) | - | 2156682..2158055 (+) | 1374 | WP_053052282.1 | L-cystine transporter | - |
| AKG93_RS09680 (AKG93_009680) | - | 2158277..2158957 (+) | 681 | WP_053052283.1 | DUF1826 domain-containing protein | - |
| AKG93_RS09685 (AKG93_009685) | sbcB | 2159119..2160540 (+) | 1422 | WP_005445536.1 | exodeoxyribonuclease I | Machinery gene |
| AKG93_RS09690 (AKG93_009690) | - | 2160599..2160973 (+) | 375 | WP_005445537.1 | CidA/LrgA family protein | - |
| AKG93_RS09695 (AKG93_009695) | - | 2160975..2161652 (+) | 678 | WP_005445538.1 | LrgB family protein | - |
| AKG93_RS09700 (AKG93_009700) | cdd | 2161908..2162795 (+) | 888 | WP_005445539.1 | cytidine deaminase | - |
| AKG93_RS09705 (AKG93_009705) | purT | 2162944..2164119 (+) | 1176 | WP_053052284.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| AKG93_RS09710 (AKG93_009710) | - | 2164196..2164846 (-) | 651 | WP_005445541.1 | thiopurine S-methyltransferase | - |
| AKG93_RS09715 (AKG93_009715) | - | 2165183..2165956 (+) | 774 | WP_005445543.1 | phosphoribosylglycinamide formyltransferase | - |
| AKG93_RS09720 (AKG93_009720) | ihfA | 2166100..2166396 (-) | 297 | WP_005445544.1 | integration host factor subunit alpha | - |
| AKG93_RS09725 (AKG93_009725) | - | 2166923..2167801 (+) | 879 | WP_053052285.1 | AEC family transporter | - |
| AKG93_RS09730 (AKG93_009730) | - | 2167984..2168223 (+) | 240 | WP_053052286.1 | hypothetical protein | - |
| AKG93_RS09735 (AKG93_009735) | - | 2168245..2168667 (+) | 423 | WP_017817999.1 | hypothetical protein | - |
| AKG93_RS09740 (AKG93_009740) | - | 2168820..2169080 (+) | 261 | WP_005445548.1 | hypothetical protein | - |
| AKG93_RS09745 (AKG93_009745) | - | 2169080..2169463 (+) | 384 | WP_017817997.1 | hypothetical protein | - |
| AKG93_RS09750 (AKG93_009750) | - | 2169454..2169792 (+) | 339 | WP_029791121.1 | hypothetical protein | - |
| AKG93_RS09755 (AKG93_009755) | - | 2169996..2170721 (+) | 726 | WP_053052287.1 | metallophosphoesterase family protein | - |
Sequence
Protein
Download Length: 473 a.a. Molecular weight: 54569.91 Da Isoelectric Point: 4.9808
>NTDB_id=1050032 AKG93_RS09685 WP_005445536.1 2159119..2160540(+) (sbcB) [Vibrio harveyi strain VH2]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS
Nucleotide
Download Length: 1422 bp
>NTDB_id=1050032 AKG93_RS09685 WP_005445536.1 2159119..2160540(+) (sbcB) [Vibrio harveyi strain VH2]
ATGCACCAAGACAATCAGCCCACTTTTTTCTTTTTCGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGACCGCCCAAG
CCAGTTTGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATCGCCAAAATTCATGCCGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGCTTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTGGTGCATCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACATTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGTTTTTTCTCGCCTGCTG
ATCGCGCTGCTATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCACTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA
ATGCACCAAGACAATCAGCCCACTTTTTTCTTTTTCGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGACCGCCCAAG
CCAGTTTGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATCGCCAAAATTCATGCCGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGCTTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTGGTGCATCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACATTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGTTTTTTCTCGCCTGCTG
ATCGCGCTGCTATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCACTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
79.281 |
100 |
0.793 |