Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU63_RS00370 Genome accession   NZ_OZ040267
Coordinates   75176..75844 (+) Length   222 a.a.
NCBI ID   WP_001296533.1    Uniprot ID   B7N279
Organism   Escherichia coli isolate 30821_1#88     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 70176..80844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU63_RS00340 yicC 70195..71058 (-) 864 WP_000621332.1 YicC/YloC family endoribonuclease -
  ABGU63_RS00345 rph 71185..71901 (+) 717 WP_001247093.1 ribonuclease PH -
  ABGU63_RS00350 pyrE 71967..72608 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  ABGU63_RS00355 slmA 72645..73241 (-) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  ABGU63_RS00360 dut 73348..73806 (-) 459 WP_000976070.1 dUTP diphosphatase -
  ABGU63_RS00365 coaBC 73784..75004 (-) 1221 WP_000050112.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ABGU63_RS00370 radC 75176..75844 (+) 669 WP_001296533.1 DNA repair protein RadC Machinery gene
  ABGU63_RS00375 rpmB 76061..76297 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  ABGU63_RS00380 rpmG 76318..76485 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  ABGU63_RS00385 mutM 76583..77392 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ABGU63_RS00390 coaD 77431..77910 (-) 480 WP_001171854.1 pantetheine-phosphate adenylyltransferase -
  ABGU63_RS00395 waaA 77918..79195 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ABGU63_RS00400 rfaQ 79609..80667 (+) 1059 WP_000360408.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25286.40 Da        Isoelectric Point: 7.9748

>NTDB_id=1049995 ABGU63_RS00370 WP_001296533.1 75176..75844(+) (radC) [Escherichia coli isolate 30821_1#88]
MKNNVQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1049995 ABGU63_RS00370 WP_001296533.1 75176..75844(+) (radC) [Escherichia coli isolate 30821_1#88]
GTGAAAAACAATGTACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(10-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7N279

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496