Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACEPPU_RS20250 Genome accession   NZ_CP169254
Coordinates   3838385..3838759 (+) Length   124 a.a.
NCBI ID   WP_223269005.1    Uniprot ID   -
Organism   Priestia aryabhattai strain YB01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3833385..3843759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPPU_RS20230 (ACEPPU_20230) - 3833876..3834547 (-) 672 WP_013058558.1 response regulator transcription factor -
  ACEPPU_RS20235 (ACEPPU_20235) - 3834873..3835691 (+) 819 WP_013058559.1 squalene/phytoene synthase family protein -
  ACEPPU_RS20240 (ACEPPU_20240) - 3835727..3837676 (-) 1950 WP_041816612.1 FUSC family protein -
  ACEPPU_RS20245 (ACEPPU_20245) - 3837832..3838092 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  ACEPPU_RS20250 (ACEPPU_20250) nucA/comI 3838385..3838759 (+) 375 WP_223269005.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACEPPU_RS20255 (ACEPPU_20255) comJ 3838795..3839202 (+) 408 WP_013058563.1 competence protein ComJ -
  ACEPPU_RS20260 (ACEPPU_20260) helD 3839231..3841549 (-) 2319 WP_013058564.1 RNA polymerase recycling motor HelD -
  ACEPPU_RS20265 (ACEPPU_20265) - 3841794..3841919 (-) 126 WP_016765178.1 hypothetical protein -
  ACEPPU_RS20270 (ACEPPU_20270) - 3842059..3842577 (-) 519 WP_235565579.1 enoyl-CoA hydratase/isomerase family protein -
  ACEPPU_RS20275 (ACEPPU_20275) - 3842817..3843185 (+) 369 WP_029323759.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13661.90 Da        Isoelectric Point: 4.2601

>NTDB_id=1049988 ACEPPU_RS20250 WP_223269005.1 3838385..3838759(+) (nucA/comI) [Priestia aryabhattai strain YB01]
MGHAAFLAPEKTEAEVNYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEANREESLKGYPTKTGYDRDEWPMA
MCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=1049988 ACEPPU_RS20250 WP_223269005.1 3838385..3838759(+) (nucA/comI) [Priestia aryabhattai strain YB01]
ATGGGACATGCAGCTTTTTTAGCTCCTGAAAAAACGGAAGCTGAAGTAAACTATGATGCGACGCTTTATTTTCCGTTAGA
CCGATATCCTGAAACGGGTGATCATATTCGTGACGCGATTGCCGCTGGGCACTCTTCCGTTTGCACAATTGATCGCGACG
GTGCTGAAGCGAACCGGGAAGAATCGCTGAAAGGATATCCGACAAAAACAGGCTATGACCGTGATGAATGGCCAATGGCT
ATGTGCGAAGAAGGCGGAGCAGGAGCTGACATTCGCTATATTTCACCTTCTGATAACCGTGGAGCCGGCTCATGGGTTGG
AAATCAGTTAGAACAGTATCCAGATGGTACACGCGTACAATTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(30-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.227

95.968

0.645

Multiple sequence alignment