Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU82_RS09250 Genome accession   NZ_OZ040208
Coordinates   1952384..1952860 (-) Length   158 a.a.
NCBI ID   WP_001186200.1    Uniprot ID   -
Organism   Escherichia coli isolate 30224_1#333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1947384..1957860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU82_RS09200 yeeA 1947942..1949000 (+) 1059 WP_001200889.1 FUSC family protein -
  ABGU82_RS09205 tmaR 1949172..1949501 (+) 330 WP_000450409.1 DUF496 family protein -
  ABGU82_RS09210 - 1949602..1949784 (-) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  ABGU82_RS09215 - 1949904..1949984 (+) 81 WP_023441679.1 hypothetical protein -
  ABGU82_RS09220 - 1950273..1950353 (-) 81 Protein_1805 hypothetical protein -
  ABGU82_RS09225 yeeW 1950399..1950593 (-) 195 WP_000988600.1 DUF5983 family protein -
  ABGU82_RS09230 cbtA 1950590..1950964 (-) 375 WP_000854815.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ABGU82_RS09235 cbeA 1951053..1951421 (-) 369 WP_001280918.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ABGU82_RS09240 - 1951437..1952081 (-) 645 WP_000086752.1 hypothetical protein -
  ABGU82_RS09245 yeeT 1952100..1952321 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  ABGU82_RS09250 radC 1952384..1952860 (-) 477 WP_001186200.1 RadC family protein Machinery gene
  ABGU82_RS09255 - 1952876..1953349 (-) 474 WP_001542276.1 antirestriction protein -
  ABGU82_RS09260 - 1953443..1953688 (-) 246 WP_001164966.1 hypothetical protein -
  ABGU82_RS09265 - 1953688..1954506 (-) 819 WP_001542275.1 DUF932 domain-containing protein -
  ABGU82_RS09270 - 1954727..1955137 (-) 411 WP_000846703.1 hypothetical protein -
  ABGU82_RS09275 - 1955153..1955503 (-) 351 Protein_1816 hypothetical protein -
  ABGU82_RS09280 istB 1955586..1956332 (-) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17764.39 Da        Isoelectric Point: 7.6152

>NTDB_id=1049944 ABGU82_RS09250 WP_001186200.1 1952384..1952860(-) (radC) [Escherichia coli isolate 30224_1#333]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1049944 ABGU82_RS09250 WP_001186200.1 1952384..1952860(-) (radC) [Escherichia coli isolate 30224_1#333]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392