Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8947_RS02115 Genome accession   NZ_AP028371
Coordinates   432366..433334 (-) Length   322 a.a.
NCBI ID   WP_072214006.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10879     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 427366..438334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8947_RS02095 (B10879_04130) - 428881..429513 (-) 633 WP_002777778.1 membrane protein -
  R8947_RS02100 (B10879_04140) - 429679..430668 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  R8947_RS02105 (B10879_04150) - 430683..431438 (-) 756 WP_072214008.1 ABC transporter ATP-binding protein -
  R8947_RS02110 (B10879_04160) - 431435..432373 (-) 939 WP_072214007.1 iron chelate uptake ABC transporter family permease subunit -
  R8947_RS02115 (B10879_04170) ceuB 432366..433334 (-) 969 WP_072214006.1 ABC transporter permease Machinery gene
  R8947_RS02120 (B10879_04180) - 433468..434463 (-) 996 WP_072214005.1 phospholipase A -
  R8947_RS02125 (B10879_04190) - 434460..435035 (-) 576 WP_072214004.1 molybdenum cofactor guanylyltransferase -
  R8947_RS02130 (B10879_04200) - 435098..436405 (+) 1308 WP_072214003.1 NFACT family protein -
  R8947_RS02135 (B10879_04210) - 436408..436743 (+) 336 WP_038833556.1 hypothetical protein -
  R8947_RS02140 (B10879_04220) - 436752..437480 (+) 729 WP_072214002.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35403.18 Da        Isoelectric Point: 9.5069

>NTDB_id=104993 R8947_RS02115 WP_072214006.1 432366..433334(-) (ceuB) [Campylobacter coli strain BCH-10879]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSSTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKLGILISLIFFAGASFFTQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFSGLIIVSIITSVV
IVSVGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=104993 R8947_RS02115 WP_072214006.1 432366..433334(-) (ceuB) [Campylobacter coli strain BCH-10879]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGGATAATTAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGTTCTACCCAGCTTGAAATCATTTTACTTACAAGAATTCCAA
GACTTATCGCAATTTTACTCACAGGTATGAGTCTTAGTATATGTGGACTTATCATGCAACAACTCACGCAAAATAAATTT
GTTTCCCCAACCACCGCAGGGACTATGGATTGTGCTAAATTGGGCATATTGATTTCTTTAATATTTTTTGCAGGAGCCTC
TTTTTTCACCCAAGCCCTCATCGCATCTATTTTCGCACTTTTAGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCCTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCC
TATGCTTTAAACTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
ACTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGCATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTGTTTTCGGGTTTAATAATAGTTTCTATTATTACTAGCGTGGTA
ATTGTAAGCGTTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTCGTTGCCATTTATCGTGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGTGGGGCTTTGTTTTTGCTTGTTTGCGATATTATCTCAAGGCTTGTGATTTTTC
CATTTGAAATGCCTTTAAGTATAACCACAGGCGTTTTAGGATCTTTGATCTTTATTTTTCTTTTGCTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.752

100

0.898

Multiple sequence alignment