Detailed information
Bioinformatically predicted
Overview
| Name | ctsR | Type | Machinery gene |
| Locus tag | R8947_RS01520 | Genome accession | NZ_AP028371 |
| Coordinates | 303351..303662 (+) | Length | 103 a.a. |
| NCBI ID | WP_002779316.1 | Uniprot ID | A0A3K5JRX6 |
| Organism | Campylobacter coli strain BCH-10879 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 298351..308662
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8947_RS01510 (B10879_02980) | - | 299025..299663 (+) | 639 | WP_002784063.1 | HAD family hydrolase | - |
| R8947_RS01515 (B10879_02990) | nifJ | 299767..303327 (+) | 3561 | WP_002779317.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | - |
| R8947_RS01520 (B10879_03000) | ctsR | 303351..303662 (+) | 312 | WP_002779316.1 | hypothetical protein | Machinery gene |
| R8947_RS01525 (B10879_03010) | ctsD | 303640..305058 (+) | 1419 | WP_002779315.1 | pilus (MSHA type) biogenesis protein MshL | Machinery gene |
| R8947_RS01530 (B10879_03020) | ctsP | 305051..305647 (+) | 597 | WP_002779314.1 | ATP-binding protein | Machinery gene |
| R8947_RS01535 (B10879_03030) | - | 305644..306240 (+) | 597 | WP_002779313.1 | CDC27 family protein | - |
| R8947_RS01540 (B10879_03040) | ctsE | 306233..307795 (+) | 1563 | WP_002779312.1 | GspE/PulE family protein | Machinery gene |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 12269.30 Da Isoelectric Point: 6.3244
>NTDB_id=104986 R8947_RS01520 WP_002779316.1 303351..303662(+) (ctsR) [Campylobacter coli strain BCH-10879]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY
Nucleotide
Download Length: 312 bp
>NTDB_id=104986 R8947_RS01520 WP_002779316.1 303351..303662(+) (ctsR) [Campylobacter coli strain BCH-10879]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsR | Campylobacter jejuni subsp. jejuni 81-176 |
55.882 |
99.029 |
0.553 |