Detailed information
Bioinformatically predicted
Overview
| Name | rapF | Type | Regulator |
| Locus tag | ACETWW_RS17580 | Genome accession | NZ_CP169072 |
| Coordinates | 3571223..3572368 (+) | Length | 381 a.a. |
| NCBI ID | WP_015240777.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain T971 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3566223..3577368
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACETWW_RS17560 (ACETWW_17550) | - | 3567120..3567548 (-) | 429 | WP_007407634.1 | DUF1934 domain-containing protein | - |
| ACETWW_RS17565 (ACETWW_17555) | - | 3567702..3568214 (+) | 513 | Protein_3396 | bacteriocin biosynthesis protein AlbG | - |
| ACETWW_RS17570 (ACETWW_17560) | - | 3568221..3569597 (-) | 1377 | WP_374004680.1 | YncE family protein | - |
| ACETWW_RS17575 (ACETWW_17565) | - | 3569637..3570992 (-) | 1356 | WP_015240776.1 | YncE family protein | - |
| ACETWW_RS17580 (ACETWW_17570) | rapF | 3571223..3572368 (+) | 1146 | WP_015240777.1 | tetratricopeptide repeat protein | Regulator |
| ACETWW_RS17585 (ACETWW_17575) | phrF | 3572352..3572471 (+) | 120 | WP_015240778.1 | PhrC/PhrF family phosphatase-inhibitory pheromone | Regulator |
| ACETWW_RS17590 (ACETWW_17580) | - | 3572669..3572872 (+) | 204 | WP_007407640.1 | helix-turn-helix transcriptional regulator | - |
| ACETWW_RS17595 (ACETWW_17585) | - | 3572886..3573089 (+) | 204 | WP_099567169.1 | hypothetical protein | - |
| ACETWW_RS17600 (ACETWW_17590) | - | 3573124..3573309 (+) | 186 | WP_007407642.1 | DUF4177 domain-containing protein | - |
| ACETWW_RS17605 (ACETWW_17595) | - | 3573495..3573776 (+) | 282 | WP_007407643.1 | hypothetical protein | - |
| ACETWW_RS17610 (ACETWW_17600) | - | 3573820..3574332 (+) | 513 | WP_072589673.1 | stage II sporulation protein M | - |
| ACETWW_RS17615 (ACETWW_17605) | - | 3574923..3575141 (-) | 219 | WP_003151056.1 | helix-turn-helix transcriptional regulator | - |
| ACETWW_RS17620 (ACETWW_17610) | speB | 3575309..3576181 (-) | 873 | WP_007614448.1 | agmatinase | - |
| ACETWW_RS17625 (ACETWW_17615) | speE | 3576240..3577070 (-) | 831 | WP_003151052.1 | spermidine synthase | - |
Sequence
Protein
Download Length: 381 a.a. Molecular weight: 45572.57 Da Isoelectric Point: 4.5155
>NTDB_id=1049769 ACETWW_RS17580 WP_015240777.1 3571223..3572368(+) (rapF) [Bacillus velezensis strain T971]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYEIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYEIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV
Nucleotide
Download Length: 1146 bp
>NTDB_id=1049769 ACETWW_RS17580 WP_015240777.1 3571223..3572368(+) (rapF) [Bacillus velezensis strain T971]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACATATTTTTCT
ATGGATTATGCCCGGCAGGCTTATGAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTGGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACATATTTTTCT
ATGGATTATGCCCGGCAGGCTTATGAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTGGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
78.74 |
100 |
0.787 |
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
57.105 |
99.738 |
0.57 |