Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACETWW_RS16635 Genome accession   NZ_CP169072
Coordinates   3383352..3384041 (-) Length   229 a.a.
NCBI ID   WP_219152091.1    Uniprot ID   -
Organism   Bacillus velezensis strain T971     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3378352..3389041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETWW_RS16600 (ACETWW_16590) fliW 3378443..3378874 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  ACETWW_RS16605 (ACETWW_16595) - 3378904..3379473 (-) 570 WP_032867077.1 DUF6470 family protein -
  ACETWW_RS16610 (ACETWW_16600) flgL 3379564..3380481 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  ACETWW_RS16615 (ACETWW_16605) flgK 3380493..3382010 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  ACETWW_RS16620 (ACETWW_16610) - 3382026..3382508 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACETWW_RS16625 (ACETWW_16615) flgM 3382523..3382789 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACETWW_RS16630 (ACETWW_16620) - 3382859..3383278 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  ACETWW_RS16635 (ACETWW_16625) comFC 3383352..3384041 (-) 690 WP_219152091.1 phosphoribosyltransferase family protein Machinery gene
  ACETWW_RS16640 (ACETWW_16630) - 3384047..3384331 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  ACETWW_RS16645 (ACETWW_16635) comFA 3384389..3385774 (-) 1386 WP_136396658.1 DEAD/DEAH box helicase Machinery gene
  ACETWW_RS16650 (ACETWW_16640) - 3385883..3386731 (-) 849 WP_136396659.1 DegV family protein -
  ACETWW_RS16655 (ACETWW_16645) degU 3386829..3387518 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACETWW_RS16660 (ACETWW_16650) degS 3387595..3388758 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25333.92 Da        Isoelectric Point: 8.2927

>NTDB_id=1049762 ACETWW_RS16635 WP_219152091.1 3383352..3384041(-) (comFC) [Bacillus velezensis strain T971]
MNCLLCDSPISSSLTWRSLFSLAPEQEMCNICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSEMLASLLGRPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1049762 ACETWW_RS16635 WP_219152091.1 3383352..3384041(-) (comFC) [Bacillus velezensis strain T971]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCACCCGAGCAAGA
GATGTGCAACATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGATGCTGGCCTCTCTGCTCGGAAGGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment