Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8621_RS06530 Genome accession   NZ_AP028370
Coordinates   1274699..1275214 (+) Length   171 a.a.
NCBI ID   WP_060810161.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10767     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1269699..1280214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8621_RS06505 (B10767_12840) - 1270162..1270497 (+) 336 WP_032590047.1 hypothetical protein -
  R8621_RS06510 (B10767_12850) cdsA 1270506..1271231 (+) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  R8621_RS06515 (B10767_12860) dxr 1271228..1272298 (+) 1071 WP_032590049.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8621_RS06520 (B10767_12870) - 1272300..1273694 (+) 1395 WP_032590050.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8621_RS06525 (B10767_12880) tsaD 1273691..1274698 (+) 1008 WP_087700284.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8621_RS06530 (B10767_12890) ctsG 1274699..1275214 (+) 516 WP_060810161.1 type II secretion system protein Machinery gene
  R8621_RS06535 (B10767_12900) - 1275214..1276449 (+) 1236 WP_308043097.1 DUF2920 family protein -
  R8621_RS06540 (B10767_12910) - 1276515..1278245 (+) 1731 WP_249624114.1 flagellin A -
  R8621_RS06545 (B10767_12920) - 1278402..1280138 (+) 1737 WP_249624121.1 flagellin A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18664.49 Da        Isoelectric Point: 6.4683

>NTDB_id=104975 R8621_RS06530 WP_060810161.1 1274699..1275214(+) (ctsG) [Campylobacter jejuni strain BCH-10767]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104975 R8621_RS06530 WP_060810161.1 1274699..1275214(+) (ctsG) [Campylobacter jejuni strain BCH-10767]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCTGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGTTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAACAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.737

100

0.947

Multiple sequence alignment