Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACETWW_RS10455 Genome accession   NZ_CP169072
Coordinates   2170602..2171210 (+) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus velezensis strain T971     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2165602..2176210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETWW_RS10415 (ACETWW_10405) - 2166589..2167095 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  ACETWW_RS10420 (ACETWW_10410) - 2167234..2167653 (+) 420 WP_374004177.1 Hsp20/alpha crystallin family protein -
  ACETWW_RS10425 (ACETWW_10415) - 2167677..2168177 (-) 501 WP_374004179.1 YppG family protein -
  ACETWW_RS10430 (ACETWW_10420) - 2168364..2168546 (+) 183 WP_003153532.1 YppF family protein -
  ACETWW_RS10435 (ACETWW_10425) - 2168585..2168953 (-) 369 WP_007409492.1 YppE family protein -
  ACETWW_RS10440 (ACETWW_10430) - 2168999..2169244 (-) 246 WP_015240083.1 DUF5446 family protein -
  ACETWW_RS10445 (ACETWW_10435) sspM 2169450..2169554 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  ACETWW_RS10450 (ACETWW_10440) - 2169598..2170560 (-) 963 WP_374004182.1 DUF2515 domain-containing protein -
  ACETWW_RS10455 (ACETWW_10445) recU 2170602..2171210 (+) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  ACETWW_RS10460 (ACETWW_10450) - 2171249..2174032 (+) 2784 WP_080130266.1 PBP1A family penicillin-binding protein -
  ACETWW_RS10465 (ACETWW_10455) - 2174110..2174601 (-) 492 WP_032870046.1 YpoC family protein -
  ACETWW_RS10470 (ACETWW_10460) nth 2174598..2175257 (-) 660 WP_060562797.1 endonuclease III -
  ACETWW_RS10475 (ACETWW_10465) dnaD 2175276..2175974 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=1049735 ACETWW_RS10455 WP_012117837.1 2170602..2171210(+) (recU) [Bacillus velezensis strain T971]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1049735 ACETWW_RS10455 WP_012117837.1 2170602..2171210(+) (recU) [Bacillus velezensis strain T971]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCTGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACCGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment